CX300440

Overview
NameCX300440
Unique NameCX300440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length369
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_CLAM3 (Glycine cleavage system H protein OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=gcvH PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.928e-12
Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            L+Y + HEWV+ +G VAT GIT +A D L +VVFVELP  G     G     +ES K+  ++ +PI G V EVN
Sbjct:    7 LQYTAEHEWVQVDGDVATVGITAYAADKLGDVVFVELPAVGDELAGGEVVGEIESTKSVGELFAPIDGTVTEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_SYNR3 (Glycine cleavage system H protein OS=Synechococcus sp. (strain RCC307) GN=gcvH PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.131e-12
Identity = 34/74 (45.95%), Postives = 46/74 (62.16%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            L+YA SHE+          GI+  A D L ++VFVELPE GAS ++G  F  VESVKA  ++ +P+SG V+  N
Sbjct:    9 LRYADSHEYAGPSDEGIKVGISAFAVDQLGDIVFVELPEVGASIEKGSSFGTVESVKAVEEMYAPVSGTVVAAN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_PROM2 (Glycine cleavage system H protein OS=Prochlorococcus marinus (strain MIT 9215) GN=gcvH PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.131e-12
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 1
Query:  142 DGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            D L YA +HE+V  E  +   G+++ A D L ++VFVEL + G++ ++G  F  +ESVKA  +V  P SGE++ VN
Sbjct:    7 DNLNYADTHEYVLEEKGLLKIGVSEFAIDQLGDIVFVELADQGSTLEKGETFGTIESVKAVEEVYLPFSGEIVSVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_MYCVP (Glycine cleavage system H protein OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.131e-12
Identity = 35/81 (43.21%), Postives = 49/81 (60.49%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S +   L Y + HEWV+  G      GITD+AQ  L +VVFV+LP+ G+    G  F  VES K+ SD+ +P++ +VI VN
Sbjct:    2 SEIPADLSYTTEHEWVQRTGDGTVRVGITDYAQSALGDVVFVQLPDVGSDVTAGESFGEVESTKSVSDLYAPVTAKVIAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_DESVV (Glycine cleavage system H protein OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=gcvH PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.131e-12
Identity = 34/74 (45.95%), Postives = 48/74 (64.86%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            LKY+ +HEW++ EG  A  GIT  AQ+ L ++ FV+LP  G +         VESVKA S++ +P++GEVI VN
Sbjct:    7 LKYSKTHEWIRIEGDEAVIGITHFAQEQLGDLTFVDLPGVGDTLDVEQEMGSVESVKAASELYAPVAGEVIAVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_DESVH (Glycine cleavage system H protein OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=gcvH PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.131e-12
Identity = 34/74 (45.95%), Postives = 48/74 (64.86%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            LKY+ +HEW++ EG  A  GIT  AQ+ L ++ FV+LP  G +         VESVKA S++ +P++GEVI VN
Sbjct:    7 LKYSKTHEWIRIEGDEAVIGITHFAQEQLGDLTFVDLPGVGDTLDVEQEMGSVESVKAASELYAPVAGEVIAVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_CORJK (Glycine cleavage system H protein OS=Corynebacterium jeikeium (strain K411) GN=gcvH PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.131e-12
Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = 1
Query:  154 YASSHEWVKH----EGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            Y+  HEWV      EG     GIT  A + L ++VFVELPE G+  + G  F  VES K+ SD+ +P+SGEV+ VN
Sbjct:   10 YSEEHEWVNTSAVVEGETVRVGITHIAAEALGDIVFVELPEVGSEVEAGEAFGEVESTKSVSDIYAPVSGEVVAVN 85          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH1_SULTO (Probable glycine cleavage system H protein 1 OS=Sulfolobus tokodaii GN=gcvH1 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.131e-12
Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = 1
Query:  136 VLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            VL    Y+ + EW+  + ++A  GITD+AQ  L ++V VELPE     K      VVESVKA +D+ SP+SG+VIE N
Sbjct:   12 VLKDRYYSETDEWILVKENIAIVGITDYAQKKLRDIVGVELPEIDKEVKANDPVAVVESVKAAADIYSPLSGKVIETN 89          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH1_DICDI (Probable glycine cleavage system H protein 1, mitochondrial OS=Dictyostelium discoideum GN=gcvH1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.131e-12
Identity = 36/74 (48.65%), Postives = 46/74 (62.16%), Query Frame = 1
Query:  151 KYASSHEWVKHEGSVA-TAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            +Y + HEWV   GS     GITD AQ  L ++VFVE+P+ GA+  QG    VVESVKA SD+  P+ G +  VN
Sbjct:   26 RYTNDHEWVTSLGSQNYRLGITDFAQKQLGDIVFVEIPQIGATLSQGQPITVVESVKAASDIYIPMDGSITTVN 99          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_SYNPW (Glycine cleavage system H protein OS=Synechococcus sp. (strain WH7803) GN=gcvH PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.701e-12
Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  142 DGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            D  +YA SHE+   + +    G++ +A D L ++VFV+LPE GA   +G  F  VESVKA  ++ +P+SG V++ N
Sbjct:    7 DSYRYADSHEYAWQDAAAVRIGLSAYAVDQLGDIVFVDLPEVGAELNRGSSFGTVESVKAVEEMYAPLSGVVLQRN 82          
The following BLAST results are available for this feature:
BLAST of CX300440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
GCSH_CLAM33.928e-1247.30Glycine cleavage system H protein OS=Clavibacter m... [more]
GCSH_SYNR35.131e-1245.95Glycine cleavage system H protein OS=Synechococcus... [more]
GCSH_PROM25.131e-1242.11Glycine cleavage system H protein OS=Prochlorococc... [more]
GCSH_MYCVP5.131e-1243.21Glycine cleavage system H protein OS=Mycobacterium... [more]
GCSH_DESVV5.131e-1245.95Glycine cleavage system H protein OS=Desulfovibrio... [more]
GCSH_DESVH5.131e-1245.95Glycine cleavage system H protein OS=Desulfovibrio... [more]
GCSH_CORJK5.131e-1246.05Glycine cleavage system H protein OS=Corynebacteri... [more]
GCSH1_SULTO5.131e-1246.15Probable glycine cleavage system H protein 1 OS=Su... [more]
GCSH1_DICDI5.131e-1248.65Probable glycine cleavage system H protein 1, mito... [more]
GCSH_SYNPW6.701e-1240.79Glycine cleavage system H protein OS=Synechococcus... [more]

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Properties
Property NameValue
Genbank descriptionC07010C06SK SaltLeaf1 Citrus clementina cDNA clone C07010C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300440 ID=CX300440; Name=CX300440; organism=Citrus clementina; type=EST; length=369bp
GACTTGGAGCTACTGAAAAAATAAAGCAAATAAGGCATGGCACTCAGAAT
GTGGGCGTCGTCTACTGCCAATGCTCTTAGAATTTCCTGCGCCTCCAAAA
CTCCTGCATTTGCCCTCTCCAGATGCTTCTCTTCTGTCTTGGATGGGTTG
AAATATGCATCCTCGCATGAATGGGTGAAGCATGAAGGCTCTGTGGCTAC
TGCTGGCATCACTGATCATGCCCAGGATCATCTTGAAGAAGTAGTGTTTG
TGGAGCTGCCAGAAACTGGTGCCTCATTCAAACAAGGCGGCGGCTTCTGG
GTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTAATTCCCCCATTTCTGG
TGAAGTTATTGAGGTTAAC
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