CX300440

Overview
NameCX300440
Unique NameCX300440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length369
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_PROMT (Glycine cleavage system H protein OS=Prochlorococcus marinus (strain NATL2A) GN=gcvH PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.701e-12
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 1
Query:  142 DGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            D  ++A SHE+   + S+   GI++ A D L ++VFV+LPE G +  +G  F  VESVKA  D+ +P+SGE++  N
Sbjct:    7 DHFRFADSHEYAFADDSLVRIGISEFAVDQLGDIVFVDLPEEGTAIAKGESFGSVESVKAVEDMYAPVSGEIVHRN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_MYCBT (Glycine cleavage system H protein OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=gcvH PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.701e-12
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S +   L Y + HEW++  G      GITD+AQ  L +VVFV+LP  G +   G  F  VES K+ SD+ +PISG+V  VN
Sbjct:    2 SDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_MYCBP (Glycine cleavage system H protein OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=gcvH PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.701e-12
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S +   L Y + HEW++  G      GITD+AQ  L +VVFV+LP  G +   G  F  VES K+ SD+ +PISG+V  VN
Sbjct:    2 SDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_MYCBO (Glycine cleavage system H protein OS=Mycobacterium bovis GN=gcvH PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.701e-12
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S +   L Y + HEW++  G      GITD+AQ  L +VVFV+LP  G +   G  F  VES K+ SD+ +PISG+V  VN
Sbjct:    2 SDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_SYNPX (Glycine cleavage system H protein OS=Synechococcus sp. (strain WH8102) GN=gcvH PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.143e-11
Identity = 31/73 (42.47%), Postives = 48/73 (65.75%), Query Frame = 1
Query:  151 KYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            ++A SHE+   +G +   GI+  A D L ++VFV+LP+ G S  +G  F  VESVKA  D+ +P++GEV++ N
Sbjct:   10 RFADSHEYANADGELVRVGISAFAVDQLGDIVFVDLPDVGDSLDKGATFGSVESVKAVEDMYAPVAGEVVQRN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_MYCLE (Glycine cleavage system H protein OS=Mycobacterium leprae GN=gcvH PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.143e-11
Identity = 35/81 (43.21%), Postives = 46/81 (56.79%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S +   L Y + HEW++         G+TD AQ  L +VVFV+LPE GA    G  F  VES K+ SD+ +P+SG V  VN
Sbjct:    2 SDIPSDLHYTAEHEWIRRSREDTVRVGLTDFAQSTLGDVVFVQLPEVGAELAAGKSFGEVESTKSVSDLYAPVSGTVSAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_MYCLB (Glycine cleavage system H protein OS=Mycobacterium leprae (strain Br4923) GN=gcvH PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.143e-11
Identity = 35/81 (43.21%), Postives = 46/81 (56.79%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S +   L Y + HEW++         G+TD AQ  L +VVFV+LPE GA    G  F  VES K+ SD+ +P+SG V  VN
Sbjct:    2 SDIPSDLHYTAEHEWIRRSREDTVRVGLTDFAQSTLGDVVFVQLPEVGAELAAGKSFGEVESTKSVSDLYAPVSGTVSAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_MYCA9 (Glycine cleavage system H protein OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=gcvH PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.143e-11
Identity = 34/75 (45.33%), Postives = 45/75 (60.00%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATA-GITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            L Y   HEWV+  G      GITD+AQ  L +VVFV+LP+ G+    G  F  VES K+ SD+ +PI+ +VI  N
Sbjct:    8 LHYTEEHEWVRRTGDTTVRIGITDYAQSQLGDVVFVQLPDVGSELTAGSTFGEVESTKSVSDLFAPITAKVIAAN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_PROM1 (Glycine cleavage system H protein OS=Prochlorococcus marinus (strain NATL1A) GN=gcvH PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.493e-11
Identity = 31/76 (40.79%), Postives = 49/76 (64.47%), Query Frame = 1
Query:  142 DGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            D  ++A SHE+   + ++   GI++ A D L ++VFV+LPE G +  +G  F  VESVKA  D+ +P+SGE++  N
Sbjct:    7 DHFRFADSHEYAFADDALVRIGISEFAVDQLGDIVFVDLPEEGTAIAKGESFGSVESVKAVEDMYAPVSGEIVHRN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_MYCSS (Glycine cleavage system H protein OS=Mycobacterium sp. (strain MCS) GN=gcvH PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.493e-11
Identity = 35/75 (46.67%), Postives = 45/75 (60.00%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            L Y   HEWV   G      GITD+AQ  L +VVFV+LP+ GA    G  F  VES K+ SD+ +P+S +V+ VN
Sbjct:    8 LYYTDEHEWVLRTGDDTLRVGITDYAQAALGDVVFVQLPDVGAELTSGESFGEVESTKSVSDLYAPVSAKVLAVN 82          
The following BLAST results are available for this feature:
BLAST of CX300440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
GCSH_PROMT6.701e-1242.11Glycine cleavage system H protein OS=Prochlorococc... [more]
GCSH_MYCBT6.701e-1244.44Glycine cleavage system H protein OS=Mycobacterium... [more]
GCSH_MYCBP6.701e-1244.44Glycine cleavage system H protein OS=Mycobacterium... [more]
GCSH_MYCBO6.701e-1244.44Glycine cleavage system H protein OS=Mycobacterium... [more]
GCSH_SYNPX1.143e-1142.47Glycine cleavage system H protein OS=Synechococcus... [more]
GCSH_MYCLE1.143e-1143.21Glycine cleavage system H protein OS=Mycobacterium... [more]
GCSH_MYCLB1.143e-1143.21Glycine cleavage system H protein OS=Mycobacterium... [more]
GCSH_MYCA91.143e-1145.33Glycine cleavage system H protein OS=Mycobacterium... [more]
GCSH_PROM11.493e-1140.79Glycine cleavage system H protein OS=Prochlorococc... [more]
GCSH_MYCSS1.493e-1146.67Glycine cleavage system H protein OS=Mycobacterium... [more]

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Properties
Property NameValue
Genbank descriptionC07010C06SK SaltLeaf1 Citrus clementina cDNA clone C07010C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300440 ID=CX300440; Name=CX300440; organism=Citrus clementina; type=EST; length=369bp
GACTTGGAGCTACTGAAAAAATAAAGCAAATAAGGCATGGCACTCAGAAT
GTGGGCGTCGTCTACTGCCAATGCTCTTAGAATTTCCTGCGCCTCCAAAA
CTCCTGCATTTGCCCTCTCCAGATGCTTCTCTTCTGTCTTGGATGGGTTG
AAATATGCATCCTCGCATGAATGGGTGAAGCATGAAGGCTCTGTGGCTAC
TGCTGGCATCACTGATCATGCCCAGGATCATCTTGAAGAAGTAGTGTTTG
TGGAGCTGCCAGAAACTGGTGCCTCATTCAAACAAGGCGGCGGCTTCTGG
GTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTAATTCCCCCATTTCTGG
TGAAGTTATTGAGGTTAAC
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