CX300440

Overview
NameCX300440
Unique NameCX300440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length369
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_MYCSK (Glycine cleavage system H protein OS=Mycobacterium sp. (strain KMS) GN=gcvH PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.493e-11
Identity = 35/75 (46.67%), Postives = 45/75 (60.00%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            L Y   HEWV   G      GITD+AQ  L +VVFV+LP+ GA    G  F  VES K+ SD+ +P+S +V+ VN
Sbjct:    8 LYYTDEHEWVLRTGDDTLRVGITDYAQAALGDVVFVQLPDVGAELTSGESFGEVESTKSVSDLYAPVSAKVLAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_MYCSJ (Glycine cleavage system H protein OS=Mycobacterium sp. (strain JLS) GN=gcvH PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.493e-11
Identity = 35/75 (46.67%), Postives = 45/75 (60.00%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            L Y   HEWV   G      GITD+AQ  L +VVFV+LP+ GA    G  F  VES K+ SD+ +P+S +V+ VN
Sbjct:    8 LYYTDEHEWVLRTGDDTLRVGITDYAQAALGDVVFVQLPDVGAELTSGESFGEVESTKSVSDLYAPVSAKVLAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_DESVM (Glycine cleavage system H protein OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=gcvH PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.950e-11
Identity = 35/79 (44.30%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  133 SVLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S+   L Y  +HEWV+ EG  A  GIT  AQ+ L ++ FV+LP  G +   G     VESVKA S++ SP++G V  VN
Sbjct:    2 SIPADLLYTDTHEWVRIEGDEAVIGITQFAQEQLGDLTFVDLPAVGDTLATGQEMGSVESVKAASELYSPLAGTVSAVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_SALRD (Glycine cleavage system H protein OS=Salinibacter ruber (strain DSM 13855) GN=gcvH PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.546e-11
Identity = 32/76 (42.11%), Postives = 42/76 (55.26%), Query Frame = 1
Query:  142 DGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            D L Y   HEW++ E   AT GITD AQ  L ++VFVEL   G    Q   F  VE+VK  S++  P+ G +  +N
Sbjct:    5 DDLYYTDDHEWLRVENGTATVGITDFAQSELGDIVFVELEPEGTKLGQDDIFGTVEAVKTVSELYMPVGGTITAIN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_MYCGI (Glycine cleavage system H protein OS=Mycobacterium gilvum (strain PYR-GCK) GN=gcvH PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.326e-11
Identity = 34/81 (41.98%), Postives = 48/81 (59.26%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S +   L Y   HEWV+  G      GITD+AQ  L +VVFV+LP+  A+   G  F  VES K+ SD+ +P++ +V+ VN
Sbjct:    2 SEIPADLSYTEEHEWVQRTGDDTVRVGITDYAQAALGDVVFVQLPDVDAALTAGESFGEVESTKSVSDLYAPLTAKVVAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH4_AQUAE (Glycine cleavage system H protein 4 OS=Aquifex aeolicus GN=gcvH4 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.326e-11
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 1
Query:  154 YASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            Y   HEWV+ +   A  GITD+AQ  L ++V+V+LPE G     G     +ESVK  + V +P++G V+EVN
Sbjct:   17 YTKEHEWVRVKNGFAEVGITDYAQKQLGDIVYVDLPEKGKEVDAGDTLANIESVKNVAPVYAPVTGTVVEVN 88          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_YEAST (Glycine cleavage system H protein, mitochondrial OS=Saccharomyces cerevisiae GN=GCV3 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.343e-11
Identity = 31/75 (41.33%), Postives = 43/75 (57.33%), Query Frame = 1
Query:  148 LKYASSHEWVK-HEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            ++Y S HEW+  H+   A  GIT +A D L +  +VELPE G    QG     +ESVK+ S++  P  G V E+N
Sbjct:   45 VRYTSQHEWIAVHQDKTAFVGITKYATDSLGDATYVELPEVGTEISQGESLGSIESVKSASEIYQPADGTVEEIN 119          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_VESOH (Glycine cleavage system H protein OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=gcvH PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.409e-11
Identity = 37/81 (45.68%), Postives = 45/81 (55.56%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S + D  +Y  +HEW+   G    T GITDHAQ  L ++VFVELP           F VVESVKA S V SP   ++IE N
Sbjct:    2 SEIRDDRQYTQTHEWILDNGDDTYTMGITDHAQALLGDMVFVELPNVDDEVSIDDEFCVVESVKAASGVYSPADLQIIEAN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH1_SULSO (Probable glycine cleavage system H protein 1 OS=Sulfolobus solfataricus GN=gcvH1 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.409e-11
Identity = 35/79 (44.30%), Postives = 48/79 (60.76%), Query Frame = 1
Query:  136 VLDGLKYASSHEWVK-HEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            VL    Y  + EWV     +VA  GITD+AQ  L ++V +ELP+     K G    V+ESVKA +D+ SP+SG ++EVN
Sbjct:   11 VLTDRLYTETDEWVVLSNDNVAVIGITDYAQKKLRDIVGIELPQLQKEVKAGESVGVIESVKAAADIFSPLSGIIVEVN 89          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_THEFY (Glycine cleavage system H protein OS=Thermobifida fusca (strain YX) GN=gcvH PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.676e-11
Identity = 33/79 (41.77%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  133 SVLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            SV   L Y   HEWV     +AT GIT  A + L ++V+VE PE G++   G     +ES K+ S++ SP+ GEV++VN
Sbjct:    2 SVPAELGYTKEHEWVAINEGIATVGITAFAAEALGDIVYVEPPEVGSTVTAGESCGEIESHKSVSELYSPVDGEVVDVN 80          
The following BLAST results are available for this feature:
BLAST of CX300440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
GCSH_MYCSK1.493e-1146.67Glycine cleavage system H protein OS=Mycobacterium... [more]
GCSH_MYCSJ1.493e-1146.67Glycine cleavage system H protein OS=Mycobacterium... [more]
GCSH_DESVM1.950e-1144.30Glycine cleavage system H protein OS=Desulfovibrio... [more]
GCSH_SALRD2.546e-1142.11Glycine cleavage system H protein OS=Salinibacter ... [more]
GCSH_MYCGI3.326e-1141.98Glycine cleavage system H protein OS=Mycobacterium... [more]
GCSH4_AQUAE3.326e-1143.06Glycine cleavage system H protein 4 OS=Aquifex aeo... [more]
GCSH_YEAST4.343e-1141.33Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_VESOH7.409e-1145.68Glycine cleavage system H protein OS=Vesicomyosoci... [more]
GCSH1_SULSO7.409e-1144.30Probable glycine cleavage system H protein 1 OS=Su... [more]
GCSH_THEFY9.676e-1141.77Glycine cleavage system H protein OS=Thermobifida ... [more]

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Properties
Property NameValue
Genbank descriptionC07010C06SK SaltLeaf1 Citrus clementina cDNA clone C07010C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300440 ID=CX300440; Name=CX300440; organism=Citrus clementina; type=EST; length=369bp
GACTTGGAGCTACTGAAAAAATAAAGCAAATAAGGCATGGCACTCAGAAT
GTGGGCGTCGTCTACTGCCAATGCTCTTAGAATTTCCTGCGCCTCCAAAA
CTCCTGCATTTGCCCTCTCCAGATGCTTCTCTTCTGTCTTGGATGGGTTG
AAATATGCATCCTCGCATGAATGGGTGAAGCATGAAGGCTCTGTGGCTAC
TGCTGGCATCACTGATCATGCCCAGGATCATCTTGAAGAAGTAGTGTTTG
TGGAGCTGCCAGAAACTGGTGCCTCATTCAAACAAGGCGGCGGCTTCTGG
GTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTAATTCCCCCATTTCTGG
TGAAGTTATTGAGGTTAAC
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