CX300440

Overview
NameCX300440
Unique NameCX300440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length369
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_RHOBA (Glycine cleavage system H protein OS=Rhodopirellula baltica GN=gcvH PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.676e-11
Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 1
Query:  148 LKYASSHEWV--KHEGS--VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            L+YA +HEWV  + EG    AT GI+  A + L ++V+++LPE G + + G  F  VESVKA S + SP++GEV+ V+
Sbjct:    8 LRYAETHEWVDVQEEGGDKFATIGISAFAVEQLNDLVYMDLPEVGRTLEVGEEFGEVESVKAVSPLYSPVAGEVVAVH 85          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_METFK (Glycine cleavage system H protein OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=gcvH PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.676e-11
Identity = 33/80 (41.25%), Postives = 49/80 (61.25%), Query Frame = 1
Query:  133 SVLDGLKYASSHEWVK-HEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            ++ + L+Y + H WV+  E     AGITDHAQD L ++V+VE P+ G     G    +VESVK  SD+++P+ G V  +N
Sbjct:    2 NIPENLQYTAEHLWVRPDENGHWLAGITDHAQDLLGDIVYVEAPKPGTRLSAGQPCGLVESVKTGSDLHAPLDGTVTAIN 81          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH1_PSEPK (Glycine cleavage system H protein 1 OS=Pseudomonas putida (strain KT2440) GN=gcvH1 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.676e-11
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 1
Query:  148 LKYASSHEWVKHE--GSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            L++   HEW++ E  GSV T GIT +AQ+ L +VVFV+LPE    +++G     VESVKA S V  P++GEV+EVN
Sbjct:    4 LRFTEDHEWLRVEADGSV-TVGITAYAQNALGDVVFVQLPEL-QQYEKGNEASTVESVKAASGVYMPLTGEVVEVN 77          
The following BLAST results are available for this feature:
BLAST of CX300440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
GCSH_RHOBA9.676e-1144.87Glycine cleavage system H protein OS=Rhodopirellul... [more]
GCSH_METFK9.676e-1141.25Glycine cleavage system H protein OS=Methylobacill... [more]
GCSH1_PSEPK9.676e-1150.00Glycine cleavage system H protein 1 OS=Pseudomonas... [more]

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Properties
Property NameValue
Genbank descriptionC07010C06SK SaltLeaf1 Citrus clementina cDNA clone C07010C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300440 ID=CX300440; Name=CX300440; organism=Citrus clementina; type=EST; length=369bp
GACTTGGAGCTACTGAAAAAATAAAGCAAATAAGGCATGGCACTCAGAAT
GTGGGCGTCGTCTACTGCCAATGCTCTTAGAATTTCCTGCGCCTCCAAAA
CTCCTGCATTTGCCCTCTCCAGATGCTTCTCTTCTGTCTTGGATGGGTTG
AAATATGCATCCTCGCATGAATGGGTGAAGCATGAAGGCTCTGTGGCTAC
TGCTGGCATCACTGATCATGCCCAGGATCATCTTGAAGAAGTAGTGTTTG
TGGAGCTGCCAGAAACTGGTGCCTCATTCAAACAAGGCGGCGGCTTCTGG
GTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTAATTCCCCCATTTCTGG
TGAAGTTATTGAGGTTAAC
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