CX300440

Overview
NameCX300440
Unique NameCX300440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length369
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_ACIAD (Glycine cleavage system H protein OS=Acinetobacter sp. (strain ADP1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.821e-17
Identity = 40/74 (54.05%), Postives = 55/74 (74.32%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            LKYA++HEWV+ EG +   GI+DHAQD L ++V+VE+PE G+    G    VVESVK  SD+++P+SG V+EVN
Sbjct:    7 LKYATTHEWVRIEGDLIVTGISDHAQDALGDLVYVEVPEVGSHMTAGTQAGVVESVKTASDIHAPVSGTVVEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_THEVO (Probable glycine cleavage system H protein OS=Thermoplasma volcanium GN=gcvH PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.106e-17
Identity = 39/80 (48.75%), Postives = 55/80 (68.75%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            ++V DGLKY  +HEW K +  +AT GITD+AQ  + ++V+V+LPE G   K G     +ESVK+  DV SP++GE+ EVN
Sbjct:    2 TNVPDGLKYTKTHEWYKVDNGIATVGITDYAQSQMTDIVYVDLPEVGDKKKVGDVLLTIESVKSAEDVYSPLTGEITEVN 81          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_SINMW (Glycine cleavage system H protein OS=Sinorhizobium medicae (strain WSM419) GN=gcvH PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.106e-17
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            LK+   HEW+K +G VAT GIT+HA   L ++VFVELPE G++F +G     VESVKA SDV  P+ GE++E N
Sbjct:    2 LKFTEEHEWLKIDGDVATVGITEHAAGQLGDLVFVELPEAGSTFSKGDTAATVESVKAASDVYCPLDGEIVEAN 75          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_CAUCR (Glycine cleavage system H protein OS=Caulobacter crescentus GN=gcvH PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.106e-17
Identity = 44/74 (59.46%), Postives = 52/74 (70.27%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            +++   HEWV  EG VAT GIT +A + L +VVFVE PE G   KQG G  VVESVKA SDV +P+SGEVIE N
Sbjct:    1 MRFTKDHEWVIVEGDVATVGITAYAAEQLGDVVFVETPEAGKVVKQGEGLAVVESVKAASDVYAPVSGEVIEGN 74          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_CAUCN (Glycine cleavage system H protein OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=gcvH PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.106e-17
Identity = 44/74 (59.46%), Postives = 52/74 (70.27%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            +++   HEWV  EG VAT GIT +A + L +VVFVE PE G   KQG G  VVESVKA SDV +P+SGEVIE N
Sbjct:    1 MRFTKDHEWVIVEGDVATVGITAYAAEQLGDVVFVETPEAGKVVKQGEGLAVVESVKAASDVYAPVSGEVIEGN 74          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_BRUSU (Glycine cleavage system H protein OS=Brucella suis GN=gcvH PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.106e-17
Identity = 41/72 (56.94%), Postives = 51/72 (70.83%), Query Frame = 1
Query:  154 YASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            +   HEW+  E  VAT GIT HAQ+ L ++VFVELPE G +  +G G  VVESVKA SDV +P+ GEV+EVN
Sbjct:    9 FTEDHEWINVENGVATVGITIHAQEQLGDLVFVELPEVGRTVAKGDGVVVVESVKAASDVYAPVDGEVVEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_BRUME (Glycine cleavage system H protein OS=Brucella melitensis GN=gcvH PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.106e-17
Identity = 41/72 (56.94%), Postives = 51/72 (70.83%), Query Frame = 1
Query:  154 YASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            +   HEW+  E  VAT GIT HAQ+ L ++VFVELPE G +  +G G  VVESVKA SDV +P+ GEV+EVN
Sbjct:    9 FTEDHEWINVENGVATVGITIHAQEQLGDLVFVELPEVGRTVAKGDGVVVVESVKAASDVYAPVDGEVVEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_BRUA2 (Glycine cleavage system H protein OS=Brucella abortus (strain 2308) GN=gcvH PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.106e-17
Identity = 41/72 (56.94%), Postives = 51/72 (70.83%), Query Frame = 1
Query:  154 YASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            +   HEW+  E  VAT GIT HAQ+ L ++VFVELPE G +  +G G  VVESVKA SDV +P+ GEV+EVN
Sbjct:    9 FTEDHEWINVENGVATVGITIHAQEQLGDLVFVELPEVGRTVAKGDGVVVVESVKAASDVYAPVDGEVVEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_YERE8 (Glycine cleavage system H protein OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=gcvH PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.056e-17
Identity = 45/81 (55.56%), Postives = 58/81 (71.60%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S+V   LKYASSHEWV+ +G  V + GIT+HAQ+ L ++VFV+LPE G+    G    V ESVKA SD+ +PISGE+I VN
Sbjct:    2 SNVPADLKYASSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSEVSAGSDCAVAESVKAASDIYAPISGEIIAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_SYMTH (Glycine cleavage system H protein OS=Symbiobacterium thermophilum GN=gcvH PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.056e-17
Identity = 42/74 (56.76%), Postives = 51/74 (68.92%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            LKY+  HEW++ EG++   GIT  AQD L +VVFVELPE G   KQ   F VVESVK  SD+  P SG+V+EVN
Sbjct:    8 LKYSKEHEWIRVEGNIGIVGITWFAQDQLGDVVFVELPEVGRELKQNEQFGVVESVKTVSDLYCPASGKVVEVN 81          
The following BLAST results are available for this feature:
BLAST of CX300440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
GCSH_ACIAD1.821e-1754.05Glycine cleavage system H protein OS=Acinetobacter... [more]
GCSH_THEVO3.106e-1748.75Probable glycine cleavage system H protein OS=Ther... [more]
GCSH_SINMW3.106e-1754.05Glycine cleavage system H protein OS=Sinorhizobium... [more]
GCSH_CAUCR3.106e-1759.46Glycine cleavage system H protein OS=Caulobacter c... [more]
GCSH_CAUCN3.106e-1759.46Glycine cleavage system H protein OS=Caulobacter c... [more]
GCSH_BRUSU3.106e-1756.94Glycine cleavage system H protein OS=Brucella suis... [more]
GCSH_BRUME3.106e-1756.94Glycine cleavage system H protein OS=Brucella meli... [more]
GCSH_BRUA23.106e-1756.94Glycine cleavage system H protein OS=Brucella abor... [more]
GCSH_YERE84.056e-1755.56Glycine cleavage system H protein OS=Yersinia ente... [more]
GCSH_SYMTH4.056e-1756.76Glycine cleavage system H protein OS=Symbiobacteri... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07010C06SK SaltLeaf1 Citrus clementina cDNA clone C07010C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300440 ID=CX300440; Name=CX300440; organism=Citrus clementina; type=EST; length=369bp
GACTTGGAGCTACTGAAAAAATAAAGCAAATAAGGCATGGCACTCAGAAT
GTGGGCGTCGTCTACTGCCAATGCTCTTAGAATTTCCTGCGCCTCCAAAA
CTCCTGCATTTGCCCTCTCCAGATGCTTCTCTTCTGTCTTGGATGGGTTG
AAATATGCATCCTCGCATGAATGGGTGAAGCATGAAGGCTCTGTGGCTAC
TGCTGGCATCACTGATCATGCCCAGGATCATCTTGAAGAAGTAGTGTTTG
TGGAGCTGCCAGAAACTGGTGCCTCATTCAAACAAGGCGGCGGCTTCTGG
GTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTAATTCCCCCATTTCTGG
TGAAGTTATTGAGGTTAAC
back to top