CX300440

Overview
NameCX300440
Unique NameCX300440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length369
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_STAES (Glycine cleavage system H protein OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gcvH PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.056e-17
Identity = 40/73 (54.79%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  151 KYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            KY+  HEWVK E +VAT GIT++AQ+ L ++VFVELPET     +G  F  VESVK  S++ +PISG+++EVN
Sbjct:    8 KYSKEHEWVKIENNVATVGITEYAQNELGDIVFVELPETDDELNEGDTFGSVESVKTVSELYAPISGKIVEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_RHILO (Glycine cleavage system H protein OS=Rhizobium loti GN=gcvH PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.056e-17
Identity = 40/72 (55.56%), Postives = 52/72 (72.22%), Query Frame = 1
Query:  154 YASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            + S HEW++ EG +AT GITD+AQ+ L ++VFVELPETG    +G    VVESVKA SDV +P+ GE+ E N
Sbjct:    9 FTSDHEWLRVEGGIATVGITDYAQEQLGDLVFVELPETGKKLTKGDTAVVVESVKAASDVYAPVDGEITEAN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_BURCH (Glycine cleavage system H protein OS=Burkholderia cenocepacia (strain HI2424) GN=gcvH PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.056e-17
Identity = 44/81 (54.32%), Postives = 53/81 (65.43%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S+V   LKY   HEW++ E     T GITDHAQ  L ++VF+ELPE G S   G    VVESVKA SD+ SP+SGEV+ VN
Sbjct:    2 SNVPADLKYTDEHEWIRTEADGTLTVGITDHAQSTLGDIVFLELPEVGKSVNAGDAVGVVESVKAASDIYSPVSGEVVAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_BURCA (Glycine cleavage system H protein OS=Burkholderia cenocepacia (strain AU 1054) GN=gcvH PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.056e-17
Identity = 44/81 (54.32%), Postives = 53/81 (65.43%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S+V   LKY   HEW++ E     T GITDHAQ  L ++VF+ELPE G S   G    VVESVKA SD+ SP+SGEV+ VN
Sbjct:    2 SNVPADLKYTDEHEWIRTEADGTLTVGITDHAQSTLGDIVFLELPEVGKSVNAGDAVGVVESVKAASDIYSPVSGEVVAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_STAEQ (Glycine cleavage system H protein OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gcvH PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.297e-17
Identity = 40/73 (54.79%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  151 KYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            KY+  HEWVK E +VAT GIT++AQ+ L ++VFVELPET     +G  F  VESVK  S++ +PISG+++EVN
Sbjct:    8 KYSKEHEWVKIENNVATIGITEYAQNELGDIVFVELPETDDELNEGDTFGSVESVKTVSELYAPISGKIVEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_PECCP (Glycine cleavage system H protein OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.297e-17
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S+V   LKY +SHEWV HEG  + + GIT+HAQ+ L ++VF++LPE G     G    V ESVKA SD+ +PISGE++EVN
Sbjct:    2 SNVPAELKYTTSHEWVLHEGGGIYSVGITEHAQELLGDMVFIDLPEVGTVVAAGDDCAVAESVKAASDIYAPISGEIVEVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_CHRSD (Glycine cleavage system H protein OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=gcvH PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.297e-17
Identity = 45/81 (55.56%), Postives = 53/81 (65.43%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S +   L+Y  SHEWV   G    T GITDHAQ+ L +VVFVELPETG     G  F V+ESVKA SD+  P+SGE+I VN
Sbjct:    2 SHIPANLRYTDSHEWVLDNGDGTVTIGITDHAQEALGDVVFVELPETGRELDAGEEFGVIESVKAASDLYLPLSGEIIAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_CARHZ (Glycine cleavage system H protein OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=gcvH PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.297e-17
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S V   LKY+  HEW+K +G++   GITD AQ  L ++VF+ELP  G     G  F VVESVKA SD+ +P+SG+V+EVN
Sbjct:    2 SVVPKDLKYSREHEWIKVDGNIGIIGITDFAQKSLGDIVFIELPGVGDEISAGDSFGVVESVKAASDLYAPVSGKVVEVN 81          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_BURM1 (Glycine cleavage system H protein OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=gcvH PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.297e-17
Identity = 42/81 (51.85%), Postives = 53/81 (65.43%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S+V   LKY   HEW++ E     T GITDHAQ  L ++VF+ELPE G     G    VVESVKA SD+ SP+SGE++E+N
Sbjct:    2 SNVPADLKYTEEHEWIRTEADGTLTVGITDHAQSTLGDIVFLELPEVGKQVTAGDAVGVVESVKAASDIYSPVSGEIVEIN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_BRAJA (Glycine cleavage system H protein OS=Bradyrhizobium japonicum GN=gcvH PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.297e-17
Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 1
Query:  154 YASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            Y S HEW+  EG VAT GITD+AQ  L +VVF+ELP+ G + K+     VVESVKA SDV +P++GEV+E N
Sbjct:    6 YTSDHEWLAIEGDVATVGITDYAQSQLGDVVFIELPKLGRALKKAEAAAVVESVKAASDVYAPVTGEVLETN 77          
The following BLAST results are available for this feature:
BLAST of CX300440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
GCSH_STAES4.056e-1754.79Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_RHILO4.056e-1755.56Glycine cleavage system H protein OS=Rhizobium lot... [more]
GCSH_BURCH4.056e-1754.32Glycine cleavage system H protein OS=Burkholderia ... [more]
GCSH_BURCA4.056e-1754.32Glycine cleavage system H protein OS=Burkholderia ... [more]
GCSH_STAEQ5.297e-1754.79Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_PECCP5.297e-1753.09Glycine cleavage system H protein OS=Pectobacteriu... [more]
GCSH_CHRSD5.297e-1755.56Glycine cleavage system H protein OS=Chromohalobac... [more]
GCSH_CARHZ5.297e-1751.25Glycine cleavage system H protein OS=Carboxydother... [more]
GCSH_BURM15.297e-1751.85Glycine cleavage system H protein OS=Burkholderia ... [more]
GCSH_BRAJA5.297e-1756.94Glycine cleavage system H protein OS=Bradyrhizobiu... [more]

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Properties
Property NameValue
Genbank descriptionC07010C06SK SaltLeaf1 Citrus clementina cDNA clone C07010C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300440 ID=CX300440; Name=CX300440; organism=Citrus clementina; type=EST; length=369bp
GACTTGGAGCTACTGAAAAAATAAAGCAAATAAGGCATGGCACTCAGAAT
GTGGGCGTCGTCTACTGCCAATGCTCTTAGAATTTCCTGCGCCTCCAAAA
CTCCTGCATTTGCCCTCTCCAGATGCTTCTCTTCTGTCTTGGATGGGTTG
AAATATGCATCCTCGCATGAATGGGTGAAGCATGAAGGCTCTGTGGCTAC
TGCTGGCATCACTGATCATGCCCAGGATCATCTTGAAGAAGTAGTGTTTG
TGGAGCTGCCAGAAACTGGTGCCTCATTCAAACAAGGCGGCGGCTTCTGG
GTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTAATTCCCCCATTTCTGG
TGAAGTTATTGAGGTTAAC
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