CX300440

Overview
NameCX300440
Unique NameCX300440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length369
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_TERTT (Glycine cleavage system H protein OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=gcvH PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.918e-17
Identity = 45/81 (55.56%), Postives = 53/81 (65.43%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVK-HEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S +   LKY SSHEW +  E    T GITDHAQ+ L +VVFVE PE G+    G    VVESVKA SD+ SP++GEVI VN
Sbjct:    2 SEIRSELKYLSSHEWARVEEDGTVTIGITDHAQEALGDVVFVETPEVGSQVSAGEEAGVVESVKAASDIYSPVTGEVIAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_SODGM (Glycine cleavage system H protein OS=Sodalis glossinidius (strain morsitans) GN=gcvH PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.918e-17
Identity = 44/81 (54.32%), Postives = 58/81 (71.60%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S+V   LKY +SHEWV +EG  V   GIT+HAQ+ L ++VF++LPE GA+F  G    V ESVKA SD+ +PISGE++ VN
Sbjct:    2 SNVPTELKYTASHEWVLNEGDGVYCVGITEHAQELLGDMVFMDLPEVGATFSAGEDCAVAESVKAASDIYAPISGEIVAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_SHESR (Glycine cleavage system H protein OS=Shewanella sp. (strain MR-7) GN=gcvH PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.918e-17
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWV-KHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S++   LKYASSHEW+ K E    T GIT+HAQ+ L ++VFVELPE G +   G    V ESVKA SD+ +PISGEVI VN
Sbjct:    2 SNIPTELKYASSHEWIRKEEDGSYTVGITEHAQELLGDMVFVELPEVGDTVTAGNDCAVAESVKAASDIYAPISGEVIAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_ERWT9 (Glycine cleavage system H protein OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=gcvH PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.918e-17
Identity = 43/81 (53.09%), Postives = 59/81 (72.84%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGSVA-TAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S+V + LKY  SHEWV+ E   + + GIT+HAQ+ L ++VFV+LPE G  ++QG    V ESVKA SD+ +P+SGE+IEVN
Sbjct:    2 SNVPNELKYRDSHEWVRKEADGSYSVGITEHAQELLGDMVFVDLPEVGNHYRQGDDCAVAESVKAASDIYAPLSGEIIEVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_BURCC (Glycine cleavage system H protein OS=Burkholderia cenocepacia (strain MC0-3) GN=gcvH PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.918e-17
Identity = 42/81 (51.85%), Postives = 53/81 (65.43%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S+V   LKY   HEW++ E     T GITDHAQ  L ++VF+ELPE G S   G    VVESVKA SD+ SP+SGE++ +N
Sbjct:    2 SNVPADLKYTDEHEWIRTEADGTLTVGITDHAQSTLGDIVFLELPEVGKSVNAGDAVGVVESVKAASDIYSPVSGEIVAIN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_ALTMD (Glycine cleavage system H protein OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=gcvH PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.918e-17
Identity = 44/81 (54.32%), Postives = 58/81 (71.60%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S++   L+YA++HEWV+ EG  V T GI++HAQ  L ++VFVELP+ G +   G    V ESVKA SDV +PISGEV+EVN
Sbjct:    2 SNIPTDLRYAATHEWVRPEGDGVFTVGISEHAQGLLGDMVFVELPDVGDAVSTGDDICVAESVKAASDVYAPISGEVVEVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_XANP2 (Glycine cleavage system H protein OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=gcvH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.036e-17
Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 1
Query:  139 LDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            +  ++Y   HE+V+ EG VA  GI+D+AQ  L +VVFVELPE G    +GG   VVESVKA S+V +P+SGEV+EVN
Sbjct:    1 MTSVRYTKDHEYVRVEGDVAVVGISDYAQQQLGDVVFVELPEIGKVVTKGGEAAVVESVKAASEVYAPLSGEVVEVN 77          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_STRMK (Glycine cleavage system H protein OS=Stenotrophomonas maltophilia (strain K279a) GN=gcvH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.036e-17
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGSV-ATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S +   LK+  SHEW + EG+   T GI+DHAQ  L ++V+VELPE GA  K G    VVESVKA SDV SPISG+V+EVN
Sbjct:    2 SEIPGDLKFLKSHEWARVEGNGRVTVGISDHAQGLLGDLVYVELPEVGADAKAGEQIAVVESVKAASDVYSPISGKVVEVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_SHESW (Glycine cleavage system H protein OS=Shewanella sp. (strain W3-18-1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.036e-17
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWV-KHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S++   LKYASSHEW+ K E    T GIT+HAQ+ L ++VFVELPE G +   G    V ESVKA SD+ +PISGEVI VN
Sbjct:    2 SNIPTELKYASSHEWIRKEEDGSYTVGITEHAQELLGDMVFVELPEVGDTVTAGDDCAVAESVKAASDIYAPISGEVIAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_SHESM (Glycine cleavage system H protein OS=Shewanella sp. (strain MR-4) GN=gcvH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.036e-17
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWV-KHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S++   LKYASSHEW+ K E    T GIT+HAQ+ L ++VFVELPE G +   G    V ESVKA SD+ +PISGEVI VN
Sbjct:    2 SNIPTELKYASSHEWIRKEEDGSYTVGITEHAQELLGDMVFVELPEVGDTVTAGDDCAVAESVKAASDIYAPISGEVIAVN 82          
The following BLAST results are available for this feature:
BLAST of CX300440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
GCSH_TERTT6.918e-1755.56Glycine cleavage system H protein OS=Teredinibacte... [more]
GCSH_SODGM6.918e-1754.32Glycine cleavage system H protein OS=Sodalis gloss... [more]
GCSH_SHESR6.918e-1756.79Glycine cleavage system H protein OS=Shewanella sp... [more]
GCSH_ERWT96.918e-1753.09Glycine cleavage system H protein OS=Erwinia tasma... [more]
GCSH_BURCC6.918e-1751.85Glycine cleavage system H protein OS=Burkholderia ... [more]
GCSH_ALTMD6.918e-1754.32Glycine cleavage system H protein OS=Alteromonas m... [more]
GCSH_XANP29.036e-1754.55Glycine cleavage system H protein OS=Xanthobacter ... [more]
GCSH_STRMK9.036e-1756.79Glycine cleavage system H protein OS=Stenotrophomo... [more]
GCSH_SHESW9.036e-1756.79Glycine cleavage system H protein OS=Shewanella sp... [more]
GCSH_SHESM9.036e-1756.79Glycine cleavage system H protein OS=Shewanella sp... [more]

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Properties
Property NameValue
Genbank descriptionC07010C06SK SaltLeaf1 Citrus clementina cDNA clone C07010C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300440 ID=CX300440; Name=CX300440; organism=Citrus clementina; type=EST; length=369bp
GACTTGGAGCTACTGAAAAAATAAAGCAAATAAGGCATGGCACTCAGAAT
GTGGGCGTCGTCTACTGCCAATGCTCTTAGAATTTCCTGCGCCTCCAAAA
CTCCTGCATTTGCCCTCTCCAGATGCTTCTCTTCTGTCTTGGATGGGTTG
AAATATGCATCCTCGCATGAATGGGTGAAGCATGAAGGCTCTGTGGCTAC
TGCTGGCATCACTGATCATGCCCAGGATCATCTTGAAGAAGTAGTGTTTG
TGGAGCTGCCAGAAACTGGTGCCTCATTCAAACAAGGCGGCGGCTTCTGG
GTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTAATTCCCCCATTTCTGG
TGAAGTTATTGAGGTTAAC
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