CX300440

Overview
NameCX300440
Unique NameCX300440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length369
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_SHESA (Glycine cleavage system H protein OS=Shewanella sp. (strain ANA-3) GN=gcvH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.036e-17
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWV-KHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S++   LKYASSHEW+ K E    T GIT+HAQ+ L ++VFVELPE G +   G    V ESVKA SD+ +PISGEVI VN
Sbjct:    2 SNIPTELKYASSHEWIRKEEDGSYTVGITEHAQELLGDMVFVELPEVGDTVTAGDDCAVAESVKAASDIYAPISGEVIAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_SHEPC (Glycine cleavage system H protein OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=gcvH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.036e-17
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWV-KHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S++   LKYASSHEW+ K E    T GIT+HAQ+ L ++VFVELPE G +   G    V ESVKA SD+ +PISGEVI VN
Sbjct:    2 SNIPTELKYASSHEWIRKEEDGSYTVGITEHAQELLGDMVFVELPEVGDTVTAGDDCAVAESVKAASDIYAPISGEVIAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_SHEON (Glycine cleavage system H protein OS=Shewanella oneidensis GN=gcvH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.036e-17
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWV-KHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S++   LKYASSHEW+ K E    T GIT+HAQ+ L ++VFVELPE G +   G    V ESVKA SD+ +PISGEVI VN
Sbjct:    2 SNIPTELKYASSHEWIRKEEDGSYTVGITEHAQELLGDMVFVELPEVGDTVTAGDDCAVAESVKAASDIYAPISGEVIAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_SHEAM (Glycine cleavage system H protein OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=gcvH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.036e-17
Identity = 45/81 (55.56%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWV-KHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S++   LKYASSHEW+ K +    T GIT+HAQ+ L ++VFVELPE G +   G    V ESVKA SD+ +PISGEVI VN
Sbjct:    2 SNIPSELKYASSHEWIRKEDDGTYTVGITEHAQELLGDMVFVELPEVGDTVSAGEDCAVAESVKAASDIYAPISGEVIAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_PELUB (Glycine cleavage system H protein OS=Pelagibacter ubique GN=gcvH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.036e-17
Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            +KY+  HEW+K +G  A  GIT HA + L ++VFVELPE G+S  + G   VVES KA SD+ +P+SGE+IE N
Sbjct:    4 VKYSKEHEWIKLDGDTAVVGITQHATEMLGDIVFVELPEIGSSVVKDGNAGVVESTKAASDIYTPVSGEIIENN 77          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_METEP (Glycine cleavage system H protein OS=Methylobacterium extorquens (strain PA1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.036e-17
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            L++   HEW++ +G VAT GIT HA + L ++VFVELP+ GA   +G    VVESVKA SDV +P+SGEV EVN
Sbjct:    2 LRFTDEHEWLRLDGDVATVGITAHAAEQLGDLVFVELPKVGAKLTKGEAAAVVESVKAASDVYAPLSGEVTEVN 75          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_METC4 (Glycine cleavage system H protein OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=gcvH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.036e-17
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            L++   HEW++ +G VAT GIT HA + L ++VFVELP+ GA   +G    VVESVKA SDV +P+SGEV EVN
Sbjct:    2 LRFTDEHEWLRLDGDVATVGITAHAAEQLGDLVFVELPKVGAKLTKGEAAAVVESVKAASDVYAPLSGEVTEVN 75          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_BURVG (Glycine cleavage system H protein OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=gcvH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.036e-17
Identity = 43/81 (53.09%), Postives = 53/81 (65.43%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S+V   LKY   HEWV+ E     T GITDHAQ  L ++VF+ELP+ G S   G    VVESVKA SD+ SP+SGEV+ +N
Sbjct:    2 SNVPADLKYTDEHEWVRTEADGTLTVGITDHAQSTLGDIVFLELPQVGKSVNAGDAVGVVESVKAASDIYSPVSGEVVAIN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_BURCJ (Glycine cleavage system H protein OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=gcvH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.036e-17
Identity = 42/81 (51.85%), Postives = 53/81 (65.43%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S+V   LKY   HEW++ E     T GITDHAQ  L ++VF+ELPE G S   G    VVESVKA SD+ SP+SGE++ +N
Sbjct:    2 SNVPAELKYTDEHEWIRTEADGTLTVGITDHAQSTLGDIVFLELPEVGKSVNAGDAVGVVESVKAASDIYSPVSGEIVAIN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_AGRRK (Glycine cleavage system H protein OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=gcvH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.036e-17
Identity = 41/74 (55.41%), Postives = 50/74 (67.57%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            LK+   HEW+  EG VAT GIT HA   L ++VFVELPE GASF +G     VESVKA S+V  P+ GE+ E+N
Sbjct:    2 LKFTEEHEWLNIEGDVATVGITAHAAGQLGDLVFVELPEVGASFSKGDDAATVESVKAASEVYCPLDGEITEIN 75          
The following BLAST results are available for this feature:
BLAST of CX300440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
GCSH_SHESA9.036e-1756.79Glycine cleavage system H protein OS=Shewanella sp... [more]
GCSH_SHEPC9.036e-1756.79Glycine cleavage system H protein OS=Shewanella pu... [more]
GCSH_SHEON9.036e-1756.79Glycine cleavage system H protein OS=Shewanella on... [more]
GCSH_SHEAM9.036e-1755.56Glycine cleavage system H protein OS=Shewanella am... [more]
GCSH_PELUB9.036e-1752.70Glycine cleavage system H protein OS=Pelagibacter ... [more]
GCSH_METEP9.036e-1755.41Glycine cleavage system H protein OS=Methylobacter... [more]
GCSH_METC49.036e-1755.41Glycine cleavage system H protein OS=Methylobacter... [more]
GCSH_BURVG9.036e-1753.09Glycine cleavage system H protein OS=Burkholderia ... [more]
GCSH_BURCJ9.036e-1751.85Glycine cleavage system H protein OS=Burkholderia ... [more]
GCSH_AGRRK9.036e-1755.41Glycine cleavage system H protein OS=Agrobacterium... [more]

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Properties
Property NameValue
Genbank descriptionC07010C06SK SaltLeaf1 Citrus clementina cDNA clone C07010C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300440 ID=CX300440; Name=CX300440; organism=Citrus clementina; type=EST; length=369bp
GACTTGGAGCTACTGAAAAAATAAAGCAAATAAGGCATGGCACTCAGAAT
GTGGGCGTCGTCTACTGCCAATGCTCTTAGAATTTCCTGCGCCTCCAAAA
CTCCTGCATTTGCCCTCTCCAGATGCTTCTCTTCTGTCTTGGATGGGTTG
AAATATGCATCCTCGCATGAATGGGTGAAGCATGAAGGCTCTGTGGCTAC
TGCTGGCATCACTGATCATGCCCAGGATCATCTTGAAGAAGTAGTGTTTG
TGGAGCTGCCAGAAACTGGTGCCTCATTCAAACAAGGCGGCGGCTTCTGG
GTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTAATTCCCCCATTTCTGG
TGAAGTTATTGAGGTTAAC
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