CX300440

Overview
NameCX300440
Unique NameCX300440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length369
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_ACICJ (Glycine cleavage system H protein OS=Acidiphilium cryptum (strain JF-5) GN=gcvH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.036e-17
Identity = 42/73 (57.53%), Postives = 51/73 (69.86%), Query Frame = 1
Query:  151 KYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            +++  HEWV+ +G VAT GITDHAQ  L +VVFVELPETG     G    VVESVKA SDV +P++G V E N
Sbjct:    5 RFSKDHEWVRLDGDVATVGITDHAQSALGDVVFVELPETGRHVDAGEACAVVESVKAASDVYAPLAGTVTEAN 77          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_VIBSL (Glycine cleavage system H protein OS=Vibrio splendidus (strain LGP32) GN=gcvH PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.180e-16
Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            LK+A SHEWVK  G    T GI++HAQ+ L +VVFV+LP+T    + G  F +VESVKA SD+ +PISGE++E+N
Sbjct:    5 LKFADSHEWVKDNGDGTVTIGISEHAQELLGDVVFVDLPDTEDEIEAGESFSLVESVKAASDIYAPISGEIVEIN 79          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_SHEDO (Glycine cleavage system H protein OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=gcvH PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.180e-16
Identity = 45/81 (55.56%), Postives = 57/81 (70.37%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGSVA-TAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S++   LK+ASSHEWV+ E   + T GIT+HAQ+ L ++VFVELPE G S   G    V ESVKA SD+ +PISGEV+ VN
Sbjct:    2 STIPTDLKFASSHEWVRKEDDGSYTVGITEHAQELLGDMVFVELPEVGDSVSAGAECAVAESVKAASDIYAPISGEVVAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_SHEB9 (Glycine cleavage system H protein OS=Shewanella baltica (strain OS195) GN=gcvH PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.180e-16
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWV-KHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S++   LKYASSHEW+ K E    T GIT+HAQ+ L ++VFVELPE G +   G    V ESVKA SD+ +PISGEVI VN
Sbjct:    2 SNIPTELKYASSHEWIRKEEDGSYTVGITEHAQELLGDMVFVELPEVGDTVTAGEDCAVAESVKAASDIYAPISGEVIAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_SHEB8 (Glycine cleavage system H protein OS=Shewanella baltica (strain OS185) GN=gcvH PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.180e-16
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWV-KHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S++   LKYASSHEW+ K E    T GIT+HAQ+ L ++VFVELPE G +   G    V ESVKA SD+ +PISGEVI VN
Sbjct:    2 SNIPTELKYASSHEWIRKEEDGSYTVGITEHAQELLGDMVFVELPEVGDTVTAGEDCAVAESVKAASDIYAPISGEVIAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_SHEB5 (Glycine cleavage system H protein OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=gcvH PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.180e-16
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWV-KHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S++   LKYASSHEW+ K E    T GIT+HAQ+ L ++VFVELPE G +   G    V ESVKA SD+ +PISGEVI VN
Sbjct:    2 SNIPTELKYASSHEWIRKEEDGSYTVGITEHAQELLGDMVFVELPEVGDTVTAGEDCAVAESVKAASDIYAPISGEVIAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_SHEB2 (Glycine cleavage system H protein OS=Shewanella baltica (strain OS223) GN=gcvH PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.180e-16
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWV-KHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S++   LKYASSHEW+ K E    T GIT+HAQ+ L ++VFVELPE G +   G    V ESVKA SD+ +PISGEVI VN
Sbjct:    2 SNIPTELKYASSHEWIRKEEDGSYTVGITEHAQELLGDMVFVELPEVGDTVTAGEDCAVAESVKAASDIYAPISGEVIAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_PSEHT (Glycine cleavage system H protein OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=gcvH PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.180e-16
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S++   LKYASSHEWV++EG    T GIT+HAQ+ L ++VFVELPE G     G    V ESVKA SD+ +PI GE++ +N
Sbjct:    2 SNIPSELKYASSHEWVRNEGDGTFTVGITEHAQELLGDMVFVELPEVGDEVDAGEECAVAESVKAASDIYAPIGGEIVAIN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH2_PSESM (Glycine cleavage system H protein 2 OS=Pseudomonas syringae pv. tomato GN=gcvH2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.180e-16
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S++   L++A SHEW + E     T GI+DHAQ+ L +VVFVELPE G  F  G    VVESVKA SD+ SP++GEV+EVN
Sbjct:    2 SNIPAELRFAESHEWARLEADGTVTVGISDHAQEALGDVVFVELPEIGKVFAAGDVAGVVESVKAASDIYSPVAGEVVEVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_THEMA (Glycine cleavage system H protein OS=Thermotoga maritima GN=gcvH PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.541e-16
Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = 1
Query:  151 KYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            KY  +HEWV  E  VAT GIT+HAQ+ L +VV+V+LPE G   K+G     +ESVKA +DV +P+SG+++EVN
Sbjct:    5 KYTKTHEWVSIEDKVATVGITNHAQEQLGDVVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVN 77          
The following BLAST results are available for this feature:
BLAST of CX300440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
GCSH_ACICJ9.036e-1757.53Glycine cleavage system H protein OS=Acidiphilium ... [more]
GCSH_VIBSL1.180e-1654.67Glycine cleavage system H protein OS=Vibrio splend... [more]
GCSH_SHEDO1.180e-1655.56Glycine cleavage system H protein OS=Shewanella de... [more]
GCSH_SHEB91.180e-1656.79Glycine cleavage system H protein OS=Shewanella ba... [more]
GCSH_SHEB81.180e-1656.79Glycine cleavage system H protein OS=Shewanella ba... [more]
GCSH_SHEB51.180e-1656.79Glycine cleavage system H protein OS=Shewanella ba... [more]
GCSH_SHEB21.180e-1656.79Glycine cleavage system H protein OS=Shewanella ba... [more]
GCSH_PSEHT1.180e-1653.09Glycine cleavage system H protein OS=Pseudoalterom... [more]
GCSH2_PSESM1.180e-1654.32Glycine cleavage system H protein 2 OS=Pseudomonas... [more]
GCSH_THEMA1.541e-1653.42Glycine cleavage system H protein OS=Thermotoga ma... [more]

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Properties
Property NameValue
Genbank descriptionC07010C06SK SaltLeaf1 Citrus clementina cDNA clone C07010C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300440 ID=CX300440; Name=CX300440; organism=Citrus clementina; type=EST; length=369bp
GACTTGGAGCTACTGAAAAAATAAAGCAAATAAGGCATGGCACTCAGAAT
GTGGGCGTCGTCTACTGCCAATGCTCTTAGAATTTCCTGCGCCTCCAAAA
CTCCTGCATTTGCCCTCTCCAGATGCTTCTCTTCTGTCTTGGATGGGTTG
AAATATGCATCCTCGCATGAATGGGTGAAGCATGAAGGCTCTGTGGCTAC
TGCTGGCATCACTGATCATGCCCAGGATCATCTTGAAGAAGTAGTGTTTG
TGGAGCTGCCAGAAACTGGTGCCTCATTCAAACAAGGCGGCGGCTTCTGG
GTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTAATTCCCCCATTTCTGG
TGAAGTTATTGAGGTTAAC
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