CX300441

Overview
NameCX300441
Unique NameCX300441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length390
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_GRAFK (50S ribosomal protein L14 OS=Gramella forsetii (strain KT0803) GN=rplN PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.612e-13
Identity = 44/99 (44.44%), Postives = 62/99 (62.63%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGAK +  I V G  G   R  S  VGD ++ +VK+  P+   K   V  AV+VR RK  RR DG ++ F+DNA V++ P+GEM+G+ + GP+ +E
Sbjct:   11 ADNTGAKEVLAIRVLG--GTKKRYAS--VGDKIVVSVKEATPNGSIKKGAVSTAVVVRTRKEVRRPDGSYIRFDDNACVLLGPQGEMRGTRVFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_CHLRE (50S ribosomal protein L14, chloroplastic OS=Chlamydomonas reinhardtii GN=rpl14 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.612e-13
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADN+GA+ L  I   G   R     SA +GD+++A VK   P++   R  ++ AVIVR RK  RR++G+ + F+DNA VI+N +G  +G+ + GPI +E
Sbjct:    8 LNVADNSGARELMCIRALGGSYR----ESANIGDVIIAVVKDALPNMPVKRSDIVRAVIVRTRKGIRRENGMAIRFDDNAAVIINKEGNPRGTRVFGPIARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_UNCTG (50S ribosomal protein L14 OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=rplN PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.105e-13
Identity = 44/103 (42.72%), Postives = 63/103 (61.17%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISV-KGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADN+GA+ +    V KG+K R      A +GD++ A+V+   P    K   V+ AV+VR  K  RR DG ++ F+DNA VI+N +GE KG+ I GP+ KE
Sbjct:    8 LNVADNSGARKIRCFRVTKGLKRRY-----ASIGDVIHASVQDALPHANVKKGDVVKAVVVRTVKEIRRADGTYIKFDDNATVIINDEGEPKGTRIFGPVAKE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_KINRD (50S ribosomal protein L14 OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=rplN PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.105e-13
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR +K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILCIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTKKERRRADGSYIRFDENAAVILRADGDPRGTRIFGPVGRE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_STAPU (50S ribosomal protein L14, chloroplastic OS=Staurastrum punctulatum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.105e-13
Identity = 40/102 (39.22%), Postives = 64/102 (62.75%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADN+GA+ L  I V G   R      A +GDM++A VK+  P++   + +V+ AVIVR  K  +R +G+ + F+DNA V+VN +G  +G+ + GP+ +E
Sbjct:    8 LNVADNSGARRLMCIRVLGSSNR----KYANIGDMIIAVVKEAVPNMPLKKSEVVRAVIVRTCKGIKRNNGMILRFDDNAAVVVNQEGNPRGTRVFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_THEFY (50S ribosomal protein L14 OS=Thermobifida fusca (strain YX) GN=rplN PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.749e-13
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGAK L  I V G  GR      A +GD ++ATVK   P    K   ++ AV+VR  K  RR DG ++ F++NA V++   G+ +G+ I GP+G+E
Sbjct:   11 ADNTGAKELLTIRVLGGSGRRY----ASIGDTIVATVKDALPGAGVKKGDIVKAVVVRTTKERRRPDGFYIRFDENAAVLIKDGGDPRGTRIFGPVGRE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_RENSM (50S ribosomal protein L14 OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=rplN PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.749e-13
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR +K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILAIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTKKERRRADGSYIKFDENAAVILKNDGDPRGTRIFGPVGRE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_CHLP8 (50S ribosomal protein L14 OS=Chlorobaculum parvum (strain NCIB 8327) GN=rplN PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.749e-13
Identity = 43/99 (43.43%), Postives = 61/99 (61.62%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADN+GAK +  I V G  GR      A +GD +M TVK   P+    +K V  AV+VR  K  RRKDG ++ F++NA V++N +GE +G+ I GP+ +E
Sbjct:   11 ADNSGAKKVRCIHVFGGTGRRY----AALGDQIMVTVKAAVPNGVVKKKDVCKAVVVRCAKEQRRKDGSYIRFDENAVVLLNAQGEPRGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_ARTS2 (50S ribosomal protein L14 OS=Arthrobacter sp. (strain FB24) GN=rplN PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.749e-13
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR +K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTKKERRRADGSYIKFDENAAVILKNDGDPRGTRIFGPVGRE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_ARTCA (50S ribosomal protein L14 OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=rplN PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.749e-13
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR +K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTKKERRRADGSYIKFDENAAVILKNDGDPRGTRIFGPVGRE 105          
The following BLAST results are available for this feature:
BLAST of CX300441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 467
Match NameE-valueIdentityDescription
RL14_GRAFK1.612e-1344.4450S ribosomal protein L14 OS=Gramella forsetii (st... [more]
RK14_CHLRE1.612e-1341.1850S ribosomal protein L14, chloroplastic OS=Chlamy... [more]
RL14_UNCTG2.105e-1342.7250S ribosomal protein L14 OS=Uncultured termite gr... [more]
RL14_KINRD2.105e-1344.4450S ribosomal protein L14 OS=Kineococcus radiotole... [more]
RK14_STAPU2.105e-1339.2250S ribosomal protein L14, chloroplastic OS=Staura... [more]
RL14_THEFY2.749e-1342.4250S ribosomal protein L14 OS=Thermobifida fusca (s... [more]
RL14_RENSM2.749e-1344.4450S ribosomal protein L14 OS=Renibacterium salmoni... [more]
RL14_CHLP82.749e-1343.4350S ribosomal protein L14 OS=Chlorobaculum parvum ... [more]
RL14_ARTS22.749e-1344.4450S ribosomal protein L14 OS=Arthrobacter sp. (str... [more]
RL14_ARTCA2.749e-1344.4450S ribosomal protein L14 OS=Arthrobacter chloroph... [more]

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Properties
Property NameValue
Genbank descriptionC07010C07SK SaltLeaf1 Citrus clementina cDNA clone C07010C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300441 ID=CX300441; Name=CX300441; organism=Citrus clementina; type=EST; length=390bp
CTTTAGCTGCGAAAATGTCGAAGCGAGGACGTGGAGGATCAGCAGGTAAC
AAGTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTGTGC
TGACAACACTGGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCA
AAGGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATG
GCTACCGTGAAGAAAGGGAAGCCTGATCTTAGGAAGAAGGTGATGCCCGC
CGTCATTGTAAGGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCA
TGTACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAAATG
AAGGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTG
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