CX300441

Overview
NameCX300441
Unique NameCX300441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length390
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_PORPU (50S ribosomal protein L14, chloroplastic OS=Porphyra purpurea GN=rpl14 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.690e-13
Identity = 41/103 (39.81%), Postives = 61/103 (59.22%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPS-ACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADN+GA+ +  I V G        PS A +GD+++  VK   P++   R  V+ AV+VR RK  RR DG+ + F+DNA VI+N     +G+ + GPI +E
Sbjct:    8 LNVADNSGARKIMCIRVLGTSN-----PSYASIGDVIIGVVKDASPNMPVKRSDVVRAVVVRTRKALRRNDGMSIRFDDNAAVIINQDNNPRGTRVFGPIARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_FAGEA (50S ribosomal protein L14, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=rpl14 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.690e-13
Identity = 39/102 (38.24%), Postives = 65/102 (63.73%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P++   R +V+ AVIVR RK  +R++G+ + ++DNA VI++ KG  KG+ + G I +E
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDIIVAVIKEAIPNMPLERSEVIRAVIVRTRKELKRENGMIIRYDDNAAVIIDQKGNPKGTRVFGAIARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_THEAB (50S ribosomal protein L14 OS=Thermosipho africanus (strain TCF52B) GN=rplN PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.125e-13
Identity = 44/102 (43.14%), Postives = 64/102 (62.75%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADN+GAK L +I V G     +R     VGD+V+ +V+   P  DL+K  V+ AVIVR +K  RR DG ++ F+DNA V+++   E KG+ + GP+ KE
Sbjct:    8 LNVADNSGAKLLRVIRVMGG----SRRKWGTVGDVVVCSVRDAVPNGDLKKGDVVKAVIVRTKKEIRRPDGTYIRFDDNAAVVLDKYNEPKGTRVFGPVAKE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_STRGG (50S ribosomal protein L14 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=rplN PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.125e-13
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR  K  RR+DG ++ F++NA VI+   G+ +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTVKERRRQDGSYIRFDENAAVILKNDGDPRGTRIFGPVGRE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_NOCSJ (50S ribosomal protein L14 OS=Nocardioides sp. (strain BAA-499 / JS614) GN=rplN PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.125e-13
Identity = 44/99 (44.44%), Postives = 60/99 (60.61%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AV+VR  K  RR DG ++ F++NA VI+   GE +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILCIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVVVRTVKERRRPDGSYIRFDENAAVILKNDGEPRGTRIFGPVGRE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_CARHZ (50S ribosomal protein L14 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rplN PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.125e-13
Identity = 41/108 (37.96%), Postives = 63/108 (58.33%), Query Frame = 3
Query:   72 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            + V   +N ADNTGAK L  I V G   R      A +GD+++ +VK+  PD    + +V+ AV+VR +K  RR DG ++ F++NA VI+      +G+ I GP+ +E
Sbjct:    2 IQVQTILNSADNTGAKKLMCIRVLGGSNRRY----ASLGDIIVCSVKEATPDAVVKKGEVVKAVVVRTKKEVRRPDGTYIKFDENAAVIIKDDKSPRGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_SACOF (50S ribosomal protein L14, chloroplastic OS=Saccharum officinarum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.125e-13
Identity = 39/102 (38.24%), Postives = 62/102 (60.78%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADN+GA+ L  I V G  G       A +GD+++A +K   P +   R +V+ AVIVR RK ++  DG+ + ++DNA VI++ KG  KG+ + G + +E
Sbjct:    8 LNVADNSGARKLMCIRVIGAAGNQRY---ARIGDVIIAVIKDAVPQMPLERSEVIRAVIVRTRKEFKGDDGIIIRYDDNAAVIIDQKGNPKGTRVFGAVAEE 106          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_SACHY (50S ribosomal protein L14, chloroplastic OS=Saccharum hybrid GN=rpl14 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.125e-13
Identity = 39/102 (38.24%), Postives = 62/102 (60.78%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADN+GA+ L  I V G  G       A +GD+++A +K   P +   R +V+ AVIVR RK ++  DG+ + ++DNA VI++ KG  KG+ + G + +E
Sbjct:    8 LNVADNSGARKLMCIRVIGAAGNQRY---ARIGDVIIAVIKDAVPQMPLERSEVIRAVIVRTRKEFKGDDGIIIRYDDNAAVIIDQKGNPKGTRVFGAVAEE 106          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_NEPOL (50S ribosomal protein L14, chloroplastic OS=Nephroselmis olivacea GN=rpl14 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.125e-13
Identity = 41/99 (41.41%), Postives = 61/99 (61.62%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADN+GA+ L  I V G + R      A +GD+++A VK   P++  K   V+ AV+VR  KP RR  G+ + F+DNA VIVN +G  +G+ + GP+ +E
Sbjct:   11 ADNSGARQLMCIRVLGGRKRY-----ASIGDVIIAVVKDAIPNMPVKKSDVVRAVVVRTSKPVRRDTGMLIRFDDNAAVIVNQEGNPRGTRVFGPVARE 104          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_MAIZE (50S ribosomal protein L14, chloroplastic OS=Zea mays GN=rpl14 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.125e-13
Identity = 39/102 (38.24%), Postives = 62/102 (60.78%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADN+GA+ L  I V G  G       A +GD+++A +K   P +   R +V+ AVIVR RK ++  DG+ + ++DNA VI++ KG  KG+ + G + +E
Sbjct:    8 LNVADNSGARKLMCIRVIGAAGNQRY---ARIGDVIIAVIKDAVPQMPLERSEVIRAVIVRTRKEFKGDDGIIIRYDDNAAVIIDQKGNPKGTRVFGAVAEE 106          
The following BLAST results are available for this feature:
BLAST of CX300441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 467
Match NameE-valueIdentityDescription
RK14_PORPU4.690e-1339.8150S ribosomal protein L14, chloroplastic OS=Porphy... [more]
RK14_FAGEA4.690e-1338.2450S ribosomal protein L14, chloroplastic OS=Fagopy... [more]
RL14_THEAB6.125e-1343.1450S ribosomal protein L14 OS=Thermosipho africanus... [more]
RL14_STRGG6.125e-1344.4450S ribosomal protein L14 OS=Streptomyces griseus ... [more]
RL14_NOCSJ6.125e-1344.4450S ribosomal protein L14 OS=Nocardioides sp. (str... [more]
RL14_CARHZ6.125e-1337.9650S ribosomal protein L14 OS=Carboxydothermus hydr... [more]
RK14_SACOF6.125e-1338.2450S ribosomal protein L14, chloroplastic OS=Saccha... [more]
RK14_SACHY6.125e-1338.2450S ribosomal protein L14, chloroplastic OS=Saccha... [more]
RK14_NEPOL6.125e-1341.4150S ribosomal protein L14, chloroplastic OS=Nephro... [more]
RK14_MAIZE6.125e-1338.2450S ribosomal protein L14, chloroplastic OS=Zea ma... [more]

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Properties
Property NameValue
Genbank descriptionC07010C07SK SaltLeaf1 Citrus clementina cDNA clone C07010C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300441 ID=CX300441; Name=CX300441; organism=Citrus clementina; type=EST; length=390bp
CTTTAGCTGCGAAAATGTCGAAGCGAGGACGTGGAGGATCAGCAGGTAAC
AAGTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTGTGC
TGACAACACTGGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCA
AAGGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATG
GCTACCGTGAAGAAAGGGAAGCCTGATCTTAGGAAGAAGGTGATGCCCGC
CGTCATTGTAAGGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCA
TGTACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAAATG
AAGGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTG
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