CX300441
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_PORPU (50S ribosomal protein L14, chloroplastic OS=Porphyra purpurea GN=rpl14 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.690e-13 Identity = 41/103 (39.81%), Postives = 61/103 (59.22%), Query Frame = 3 Query: 90 VNCADNTGAKNLYIISVKGIKGRLNRLPS-ACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386 +N ADN+GA+ + I V G PS A +GD+++ VK P++ R V+ AV+VR RK RR DG+ + F+DNA VI+N +G+ + GPI +E Sbjct: 8 LNVADNSGARKIMCIRVLGTSN-----PSYASIGDVIIGVVKDASPNMPVKRSDVVRAVVVRTRKALRRNDGMSIRFDDNAAVIINQDNNPRGTRVFGPIARE 105
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_FAGEA (50S ribosomal protein L14, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=rpl14 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.690e-13 Identity = 39/102 (38.24%), Postives = 65/102 (63.73%), Query Frame = 3 Query: 90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386 +N ADN+GA+ L I + G R A +GD+++A +K+ P++ R +V+ AVIVR RK +R++G+ + ++DNA VI++ KG KG+ + G I +E Sbjct: 8 LNVADNSGARELMCIRIIGASNRRY----AHIGDIIVAVIKEAIPNMPLERSEVIRAVIVRTRKELKRENGMIIRYDDNAAVIIDQKGNPKGTRVFGAIARE 105
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_THEAB (50S ribosomal protein L14 OS=Thermosipho africanus (strain TCF52B) GN=rplN PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.125e-13 Identity = 44/102 (43.14%), Postives = 64/102 (62.75%), Query Frame = 3 Query: 90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386 +N ADN+GAK L +I V G +R VGD+V+ +V+ P DL+K V+ AVIVR +K RR DG ++ F+DNA V+++ E KG+ + GP+ KE Sbjct: 8 LNVADNSGAKLLRVIRVMGG----SRRKWGTVGDVVVCSVRDAVPNGDLKKGDVVKAVIVRTKKEIRRPDGTYIRFDDNAAVVLDKYNEPKGTRVFGPVAKE 105
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_STRGG (50S ribosomal protein L14 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=rplN PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.125e-13 Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = 3 Query: 99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386 ADNTGAK + I V G GR A +GD+++ATVK P K V+ AVIVR K RR+DG ++ F++NA VI+ G+ +G+ I GP+G+E Sbjct: 11 ADNTGAKEILTIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTVKERRRQDGSYIRFDENAAVILKNDGDPRGTRIFGPVGRE 105
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_NOCSJ (50S ribosomal protein L14 OS=Nocardioides sp. (strain BAA-499 / JS614) GN=rplN PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.125e-13 Identity = 44/99 (44.44%), Postives = 60/99 (60.61%), Query Frame = 3 Query: 99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386 ADNTGAK + I V G GR A +GD+++ATVK P K V+ AV+VR K RR DG ++ F++NA VI+ GE +G+ I GP+G+E Sbjct: 11 ADNTGAKEILCIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVVVRTVKERRRPDGSYIRFDENAAVILKNDGEPRGTRIFGPVGRE 105
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_CARHZ (50S ribosomal protein L14 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rplN PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.125e-13 Identity = 41/108 (37.96%), Postives = 63/108 (58.33%), Query Frame = 3 Query: 72 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386 + V +N ADNTGAK L I V G R A +GD+++ +VK+ PD + +V+ AV+VR +K RR DG ++ F++NA VI+ +G+ I GP+ +E Sbjct: 2 IQVQTILNSADNTGAKKLMCIRVLGGSNRRY----ASLGDIIVCSVKEATPDAVVKKGEVVKAVVVRTKKEVRRPDGTYIKFDENAAVIIKDDKSPRGTRIFGPVARE 105
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_SACOF (50S ribosomal protein L14, chloroplastic OS=Saccharum officinarum GN=rpl14 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.125e-13 Identity = 39/102 (38.24%), Postives = 62/102 (60.78%), Query Frame = 3 Query: 90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386 +N ADN+GA+ L I V G G A +GD+++A +K P + R +V+ AVIVR RK ++ DG+ + ++DNA VI++ KG KG+ + G + +E Sbjct: 8 LNVADNSGARKLMCIRVIGAAGNQRY---ARIGDVIIAVIKDAVPQMPLERSEVIRAVIVRTRKEFKGDDGIIIRYDDNAAVIIDQKGNPKGTRVFGAVAEE 106
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_SACHY (50S ribosomal protein L14, chloroplastic OS=Saccharum hybrid GN=rpl14 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.125e-13 Identity = 39/102 (38.24%), Postives = 62/102 (60.78%), Query Frame = 3 Query: 90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386 +N ADN+GA+ L I V G G A +GD+++A +K P + R +V+ AVIVR RK ++ DG+ + ++DNA VI++ KG KG+ + G + +E Sbjct: 8 LNVADNSGARKLMCIRVIGAAGNQRY---ARIGDVIIAVIKDAVPQMPLERSEVIRAVIVRTRKEFKGDDGIIIRYDDNAAVIIDQKGNPKGTRVFGAVAEE 106
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_NEPOL (50S ribosomal protein L14, chloroplastic OS=Nephroselmis olivacea GN=rpl14 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.125e-13 Identity = 41/99 (41.41%), Postives = 61/99 (61.62%), Query Frame = 3 Query: 99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386 ADN+GA+ L I V G + R A +GD+++A VK P++ K V+ AV+VR KP RR G+ + F+DNA VIVN +G +G+ + GP+ +E Sbjct: 11 ADNSGARQLMCIRVLGGRKRY-----ASIGDVIIAVVKDAIPNMPVKKSDVVRAVVVRTSKPVRRDTGMLIRFDDNAAVIVNQEGNPRGTRVFGPVARE 104
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_MAIZE (50S ribosomal protein L14, chloroplastic OS=Zea mays GN=rpl14 PE=3 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 6.125e-13 Identity = 39/102 (38.24%), Postives = 62/102 (60.78%), Query Frame = 3 Query: 90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386 +N ADN+GA+ L I V G G A +GD+++A +K P + R +V+ AVIVR RK ++ DG+ + ++DNA VI++ KG KG+ + G + +E Sbjct: 8 LNVADNSGARKLMCIRVIGAAGNQRY---ARIGDVIIAVIKDAVPQMPLERSEVIRAVIVRTRKEFKGDDGIIIRYDDNAAVIIDQKGNPKGTRVFGAVAEE 106 The following BLAST results are available for this feature:
BLAST of CX300441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 467
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300441 ID=CX300441; Name=CX300441; organism=Citrus clementina; type=EST; length=390bpback to top |