CX300441

Overview
NameCX300441
Unique NameCX300441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length390
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_STRAW (50S ribosomal protein L14 OS=Streptomyces avermitilis GN=rplN PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.045e-12
Identity = 44/99 (44.44%), Postives = 60/99 (60.61%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR  K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILCIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTVKERRRPDGSYIRFDENAAVILKNDGDPRGTRIFGPVGRE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_RUBXD (50S ribosomal protein L14 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rplN PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.045e-12
Identity = 41/99 (41.41%), Postives = 63/99 (63.64%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADN+GA++L  I V G   R     SA +GD+++A+VK+  P    K   V+ AV+VR +K  RR+DG ++ F +NAGV++N  G  +G+ I GP+ +E
Sbjct:   11 ADNSGARSLLCIRVLGGSKRR----SAGIGDVIVASVKEATPGGAVKKGDVVRAVVVRTKKETRREDGSYIRFGENAGVLINSDGSPRGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_MYCLE (50S ribosomal protein L14 OS=Mycobacterium leprae GN=rplN PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.045e-12
Identity = 41/99 (41.41%), Postives = 58/99 (58.59%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGAK +  I V G   R      A +GD+++ TVK   P     R  V+ AV+VR  K  RR DG ++ F++NA VI+ P  + +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILCIRVLGGSSRRY----ASIGDVIVGTVKDAIPGGNVKRGDVVKAVVVRTAKECRRPDGSYIKFDENAAVIIKPDNDPRGTRIFGPVGRE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_FRASN (50S ribosomal protein L14 OS=Frankia sp. (strain EAN1pec) GN=rplN PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.045e-12
Identity = 40/99 (40.40%), Postives = 60/99 (60.61%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGA+ +  I V G  GR      A +GD+++ TVK   P     R  V+ AV+VR +K  RR DG ++ F++NA V++   G+ +G+ I GP+G+E
Sbjct:   11 ADNTGAREILCIRVLGGSGRRY----AGIGDIIVGTVKDALPGAGVKRGDVVKAVVVRTKKERRRPDGSYIRFDENAAVLIRDGGDPRGTRIFGPVGRE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_ACIC1 (50S ribosomal protein L14 OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=rplN PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.045e-12
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGA+ +  I V G  GR      A +GD+++ATVK   P    K   V+ AV+VR  K  RR DG ++ F++NA V++   G+ +G+ I GP+G+E
Sbjct:   11 ADNTGAREILCIRVLGGSGRRY----AGIGDVIIATVKDALPGAGVKKGDVVKAVVVRTAKERRRPDGSYIKFDENAAVLIKDGGDPRGTRIFGPVGRE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_OLTVI (50S ribosomal protein L14, chloroplastic OS=Oltmannsiellopsis viridis GN=rpl14 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.045e-12
Identity = 40/102 (39.22%), Postives = 61/102 (59.80%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            VN ADN+GA+ L  I V     +     SA +GD ++A VK+  P++  K   ++ AVIVR  K  RR DG  + F+DNA V++N +G  +G+ + GP+ +E
Sbjct:    8 VNVADNSGARKLMCIRVLDASFK----QSANIGDTIIAVVKEAIPNMPLKKSDIVRAVIVRSAKGIRRPDGTIIRFDDNAAVVINKEGNPRGTRVFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_GRATL (50S ribosomal protein L14, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl14 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.045e-12
Identity = 39/108 (36.11%), Postives = 64/108 (59.26%), Query Frame = 3
Query:   72 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            + + + +N ADN+GA+ +  I V G     N    A +GD+++  VK   P++   +  ++ AVIVR +K  RR DG+ + F+DNA VI+N +   +G+ + GPI KE
Sbjct:    2 IQIQSYLNIADNSGARKIMCIQVLGS----NNPHYANIGDIIIGVVKDALPNMPIKKSDIIRAVIVRTKKTIRRNDGMSIRFDDNAAVIINQENNPRGTRVFGPIAKE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_MYCUA (50S ribosomal protein L14 OS=Mycobacterium ulcerans (strain Agy99) GN=rplN PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.365e-12
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGAK +  I V G   R      A +GD+++ATVK   P     R  V+ AV+VR  K  RR DG ++ F++NA VI+ P  + +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILCIRVLGGSSRRY----AGIGDIIVATVKDAIPGGNVKRGDVVKAVVVRTVKERRRPDGSYIKFDENAAVIIKPDNDPRGTRIFGPVGRE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_MYCTU (50S ribosomal protein L14 OS=Mycobacterium tuberculosis GN=rplN PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.365e-12
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGAK +  I V G   R      A +GD+++ATVK   P     R  V+ AV+VR  K  RR DG ++ F++NA VI+ P  + +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILCIRVLGGSSRRY----AGIGDVIVATVKDAIPGGNVKRGDVVKAVVVRTVKERRRPDGSYIKFDENAAVIIKPDNDPRGTRIFGPVGRE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_MYCTA (50S ribosomal protein L14 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=rplN PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.365e-12
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGAK +  I V G   R      A +GD+++ATVK   P     R  V+ AV+VR  K  RR DG ++ F++NA VI+ P  + +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILCIRVLGGSSRRY----AGIGDVIVATVKDAIPGGNVKRGDVVKAVVVRTVKERRRPDGSYIKFDENAAVIIKPDNDPRGTRIFGPVGRE 105          
The following BLAST results are available for this feature:
BLAST of CX300441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 467
Match NameE-valueIdentityDescription
RL14_STRAW1.045e-1244.4450S ribosomal protein L14 OS=Streptomyces avermiti... [more]
RL14_RUBXD1.045e-1241.4150S ribosomal protein L14 OS=Rubrobacter xylanophi... [more]
RL14_MYCLE1.045e-1241.4150S ribosomal protein L14 OS=Mycobacterium leprae ... [more]
RL14_FRASN1.045e-1240.4050S ribosomal protein L14 OS=Frankia sp. (strain E... [more]
RL14_ACIC11.045e-1241.4150S ribosomal protein L14 OS=Acidothermus cellulol... [more]
RK14_OLTVI1.045e-1239.2250S ribosomal protein L14, chloroplastic OS=Oltman... [more]
RK14_GRATL1.045e-1236.1150S ribosomal protein L14, chloroplastic OS=Gracil... [more]
RL14_MYCUA1.365e-1242.4250S ribosomal protein L14 OS=Mycobacterium ulceran... [more]
RL14_MYCTU1.365e-1242.4250S ribosomal protein L14 OS=Mycobacterium tubercu... [more]
RL14_MYCTA1.365e-1242.4250S ribosomal protein L14 OS=Mycobacterium tubercu... [more]

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Properties
Property NameValue
Genbank descriptionC07010C07SK SaltLeaf1 Citrus clementina cDNA clone C07010C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300441 ID=CX300441; Name=CX300441; organism=Citrus clementina; type=EST; length=390bp
CTTTAGCTGCGAAAATGTCGAAGCGAGGACGTGGAGGATCAGCAGGTAAC
AAGTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTGTGC
TGACAACACTGGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCA
AAGGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATG
GCTACCGTGAAGAAAGGGAAGCCTGATCTTAGGAAGAAGGTGATGCCCGC
CGTCATTGTAAGGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCA
TGTACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAAATG
AAGGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTG
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