CX300441

Overview
NameCX300441
Unique NameCX300441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length390
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3742 contig Ccv1_Contig3742:14..403. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_PICTO (50S ribosomal protein L14P OS=Picrophilus torridus GN=rpl14p PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.317e-28
Identity = 58/110 (52.73%), Postives = 80/110 (72.73%), Query Frame = 3
Query:   57 RMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            R + GLP+ A + C DNTGAK + +I VK +     R+P+A VGDM +A+VKKG P++R KV+ AV+VRQR+P+RR DG  + FEDNA V+V P GE++GS I GP+ +E
Sbjct:    7 RETRGLPLGALIPCVDNTGAKMISLIDVKALHTVAKRIPAAGVGDMFIASVKKGTPEMRSKVVYAVVVRQRRPYRRADGTMIEFEDNAAVLVTPDGEVRGSEIKGPVARE 116          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_METTH (50S ribosomal protein L14P OS=Methanobacterium thermoautotrophicum GN=rpl14p PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.317e-28
Identity = 61/110 (55.45%), Postives = 83/110 (75.45%), Query Frame = 3
Query:   57 RMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +++  LPV A + C DNTGA+ + IISV+G KG   RL +A VGDMV+ +VKKG  D+R++V+ AVIVRQ+K +RR DG+ + FEDNA VIV+P+G +KGS I GP+ KE
Sbjct:    7 KVTRALPVGARLQCVDNTGAREVEIISVRGYKGVRRRLAAAGVGDMVVVSVKKGTVDMRREVLNAVIVRQKKEYRRPDGLRVKFEDNAAVIVSPEGVLKGSEIRGPVAKE 116          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_METS3 (50S ribosomal protein L14P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.952e-28
Identity = 58/109 (53.21%), Postives = 81/109 (74.31%), Query Frame = 3
Query:   60 MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +S  LP+ AT+ C DNTGA+ + IISVKG KG   RL  A VGD+V+A+VKKG  D+R++V+ AV++RQ+K + R DG+ + FEDNA VI+ P+G +KGS + GP+ KE
Sbjct:    8 VSKALPIGATLQCVDNTGAREIQIISVKGFKGVRRRLDVAGVGDLVVASVKKGTADMRREVVNAVVIRQKKEYMRADGLRVKFEDNAAVIITPEGILKGSEVRGPVAKE 116          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_METVS (50S ribosomal protein L14P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.161e-28
Identity = 59/105 (56.19%), Postives = 77/105 (73.33%), Query Frame = 3
Query:   72 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            LP  A + CADNTGAK L +I+VK   G + RLPSA VG +V  +VKKG P++RK+V+PA+I+RQ+K ++R DG  + FEDNA VIV P+G  KGS I GP+ KE
Sbjct:   12 LPNGARLVCADNTGAKELEVIAVKNYSGTVRRLPSAGVGQIVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIVTPEGTPKGSDIKGPVSKE 116          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_METVA (50S ribosomal protein L14P OS=Methanococcus vannielii GN=rpl14p PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.161e-28
Identity = 59/105 (56.19%), Postives = 77/105 (73.33%), Query Frame = 3
Query:   72 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            LP  A + CADNTGAK L +I+VK   G + RLPSA VG +V  +VKKG P++RK+V+PA+I+RQ+K ++R DG  + FEDNA VIV P+G  KGS I GP+ KE
Sbjct:   12 LPNGARLVCADNTGAKELEVIAVKNYSGTVRRLPSAGVGQIVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIVTPEGTPKGSDIKGPVSKE 116          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_METMP (50S ribosomal protein L14P OS=Methanococcus maripaludis GN=rpl14p PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.804e-28
Identity = 59/105 (56.19%), Postives = 76/105 (72.38%), Query Frame = 3
Query:   72 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            LP  A + CADNTGAK L +I+VK   G + RLP+  VG MV  +VKKG P++RK+V+PA+I+RQ+K +RR DG  + FEDNA VIV P+G  KGS I GP+ KE
Sbjct:   12 LPNGARLVCADNTGAKELEVIAVKNYVGTVRRLPAGGVGHMVFVSVKKGTPEMRKQVLPAIIIRQKKEYRRADGTRVKFEDNAAVIVTPEGTPKGSEIKGPVSKE 116          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_PYRFU (50S ribosomal protein L14P OS=Pyrococcus furiosus GN=rpl14p PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.150e-27
Identity = 65/125 (52.00%), Postives = 87/125 (69.60%), Query Frame = 3
Query:   15 MSKRGRGGSAG-NKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            M+K+G G + G +  R +  LPV A +  ADN+GAK + II V    G   RL SA VGDMV+ATVKKG+PD+R +V+ AVI+RQRK +RR DG+ + FEDNA VIV P+G  +G+ I GP+ +E
Sbjct:    1 MAKKGAGATRGVSAVRPTRALPVGAYLTVADNSGAKVIQIIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRAVIIRQRKEYRRLDGMRVKFEDNAAVIVTPEGVPRGTEIRGPVARE 125          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_METM7 (50S ribosomal protein L14P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.150e-27
Identity = 59/105 (56.19%), Postives = 76/105 (72.38%), Query Frame = 3
Query:   72 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            LP  A + CADNTGAK L II+VK   G + RLP+  VG MV  +VKKG P++RK+V+PA+I+RQ+K ++R DG  + FEDNA VIV P+G  KGS I GP+ KE
Sbjct:   12 LPNGARLVCADNTGAKELEIIAVKNYTGTVRRLPAGGVGHMVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIVTPEGTPKGSEIKGPVSKE 116          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_PYRKO (50S ribosomal protein L14P OS=Pyrococcus kodakaraensis GN=rpl14p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.502e-27
Identity = 64/125 (51.20%), Postives = 87/125 (69.60%), Query Frame = 3
Query:   15 MSKRGRGGSAG-NKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            M+K+G G + G +  R +  LP+ A +  ADN+GAK + II V G KG   RL +A VGDMV+ATVKKG+PD+R +V+ AV+VRQRK +RR DG+ + FEDNA  IV P+G  +G+ I G I +E
Sbjct:    1 MAKKGAGATRGISPVRPTRALPIGAYLKVADNSGAKVIQIIGVVGYKGTRRRLAAAGVGDMVVATVKKGRPDMRHQVVRAVVVRQRKEYRRLDGMRVKFEDNAAAIVTPEGVPRGTEIRGAIARE 125          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_METM6 (50S ribosomal protein L14P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.502e-27
Identity = 58/105 (55.24%), Postives = 76/105 (72.38%), Query Frame = 3
Query:   72 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            LP  A + CADNTGAK L +I+VK   G + RLP+  VG MV  +VKKG P++RK+V+PA+I+RQ+K ++R DG  + FEDNA VIV P+G  KGS I GP+ KE
Sbjct:   12 LPNGARLVCADNTGAKELEVIAVKNYTGTVRRLPAGGVGHMVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIVTPEGTPKGSEIKGPVSKE 116          
The following BLAST results are available for this feature:
BLAST of CX300441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 467
Match NameE-valueIdentityDescription
RL14_PICTO2.317e-2852.7350S ribosomal protein L14P OS=Picrophilus torridus... [more]
RL14_METTH2.317e-2855.4550S ribosomal protein L14P OS=Methanobacterium the... [more]
RL14_METS33.952e-2853.2150S ribosomal protein L14P OS=Methanobrevibacter s... [more]
RL14_METVS5.161e-2856.1950S ribosomal protein L14P OS=Methanococcus vannie... [more]
RL14_METVA5.161e-2856.1950S ribosomal protein L14P OS=Methanococcus vannie... [more]
RL14_METMP8.804e-2856.1950S ribosomal protein L14P OS=Methanococcus maripa... [more]
RL14_PYRFU1.150e-2752.0050S ribosomal protein L14P OS=Pyrococcus furiosus ... [more]
RL14_METM71.150e-2756.1950S ribosomal protein L14P OS=Methanococcus maripa... [more]
RL14_PYRKO1.502e-2751.2050S ribosomal protein L14P OS=Pyrococcus kodakarae... [more]
RL14_METM61.502e-2755.2450S ribosomal protein L14P OS=Methanococcus maripa... [more]

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Properties
Property NameValue
Genbank descriptionC07010C07SK SaltLeaf1 Citrus clementina cDNA clone C07010C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300441 ID=CX300441; Name=CX300441; organism=Citrus clementina; type=EST; length=390bp
CTTTAGCTGCGAAAATGTCGAAGCGAGGACGTGGAGGATCAGCAGGTAAC
AAGTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTGTGC
TGACAACACTGGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCA
AAGGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATG
GCTACCGTGAAGAAAGGGAAGCCTGATCTTAGGAAGAAGGTGATGCCCGC
CGTCATTGTAAGGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCA
TGTACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAAATG
AAGGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTG
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