CX300441

Overview
NameCX300441
Unique NameCX300441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length390
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_DESRM (50S ribosomal protein L14 OS=Desulfotomaculum reducens (strain MI-1) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.390e-11
Identity = 40/108 (37.04%), Postives = 61/108 (56.48%), Query Frame = 3
Query:   72 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            + V   +  ADNTGA+ L  I V G  G L R  S  VGD+++A+VK+  P     +  V+  V+VR  K  RR DG ++ F++NA V++      +G+ I GP+ +E
Sbjct:    2 IQVQTILKAADNTGARKLMCIRVMG--GSLRRYAS--VGDIIVASVKEATPGGVVKKGDVVKCVVVRTSKEVRRPDGSYIKFDENAAVVIKDDKTPRGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_DESOH (50S ribosomal protein L14 OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.390e-11
Identity = 38/99 (38.38%), Postives = 62/99 (62.63%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADN+GAK +Y I V G     +R   A VGD+++ +VK+  P+ + K   V+ AVIVR +K  +R DG ++ F++N+ V+++   E  G+ I GP+ +E
Sbjct:   11 ADNSGAKIVYCIKVLG----GSRRRYATVGDVIVVSVKEAIPNSKVKKGDVLKAVIVRTKKEIKRPDGSYIRFDENSAVLISGNNEPLGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_DESMR (50S ribosomal protein L14 OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.390e-11
Identity = 39/108 (36.11%), Postives = 65/108 (60.19%), Query Frame = 3
Query:   72 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            + V + ++ ADN+GAK +  I V G     +R   A VGD+++ +VK   P+ + K   VM AV+VR +K   R DG ++ F+ N+ V+++ +GE  G+ I GP+ +E
Sbjct:    2 IQVESNLDVADNSGAKRVCCIKVLGG----SRRRYATVGDIIVVSVKDALPNSKVKKGAVMKAVVVRTKKEVGRADGSYIKFDSNSAVLLSNQGEPVGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_CYTH3 (50S ribosomal protein L14 OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.390e-11
Identity = 39/102 (38.24%), Postives = 58/102 (56.86%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ++ ADN+GAK + +I V G  G+      A +GD V+ TVK        K   V  AV+VR +K  +R DG ++ F DNA V++N   E +G+ I GP+ +E
Sbjct:    8 LSVADNSGAKEVLVIRVLGGTGKRY----ASIGDKVVVTVKSAISSSNMKKGTVSKAVVVRTKKEVKRADGSYIRFSDNAAVLLNNNDEPRGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_CLOCE (50S ribosomal protein L14 OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.390e-11
Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = 3
Query:   72 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            + V + +  ADNTGAK L  I V G   R      A +GD+V+A+VK   P     +  V+  VIVR +K  RR DG ++ F++NA VI+      +G+ I GP+ +E
Sbjct:    2 IQVQSRMKVADNTGAKELMCIKVLGGSWR----KYANIGDVVVASVKNATPGGVVKKGDVVKCVIVRSKKGVRRPDGSYIRFDENAAVIIKDDKNPRGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_CHLTR (50S ribosomal protein L14 OS=Chlamydia trachomatis GN=rplN PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.390e-11
Identity = 42/99 (42.42%), Postives = 58/99 (58.59%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGAK +    V G     +R   A VGD+++ +V+  +PD   K   V+ AVIVR R    RKDG  + F+ N+ VI++ KG  KG+ I GPI +E
Sbjct:   11 ADNTGAKKVKCFKVLGG----SRRRYATVGDVIVCSVRDVEPDSSVKKGDVVKAVIVRTRNDIHRKDGSTLRFDTNSCVIIDDKGNPKGTRIFGPIARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_CHLTA (50S ribosomal protein L14 OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.390e-11
Identity = 42/99 (42.42%), Postives = 58/99 (58.59%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGAK +    V G     +R   A VGD+++ +V+  +PD   K   V+ AVIVR R    RKDG  + F+ N+ VI++ KG  KG+ I GPI +E
Sbjct:   11 ADNTGAKKVKCFKVLGG----SRRRYATVGDVIVCSVRDVEPDSSVKKGDVVKAVIVRTRNDIHRKDGSTLRFDTNSCVIIDDKGNPKGTRIFGPIARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_CAUSK (50S ribosomal protein L14 OS=Caulobacter sp. (strain K31) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.390e-11
Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 3
Query:   72 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            + +   +  ADN+GA+ +  I V G  GR      A VGD+++ +VK+  P  R K   V+ AV+VR  +  +RKDG  + F+ NA VIVN + E  G+ I GP+ +E
Sbjct:    2 IQMQTNLEVADNSGARRVMCIKVLGGAGRRY----ASVGDVIVVSVKEAIPRGRVKKGDVLRAVVVRVNQGMKRKDGSLIRFDKNAAVIVNKQSEPVGTRIFGPVPRE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_SPIOL (50S ribosomal protein L14, chloroplastic OS=Spinacia oleracea GN=rpl14 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.390e-11
Identity = 37/102 (36.27%), Postives = 62/102 (60.78%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AV+VR  K  +R +G+ + ++DNA VI++ +G  KG+ I G I +E
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----ARIGDVIVAVIKEAIPNTPLERSEVIRAVVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_ODOSI (50S ribosomal protein L14, chloroplastic OS=Odontella sinensis GN=rpl14 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.390e-11
Identity = 36/99 (36.36%), Postives = 58/99 (58.59%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGA+ +  I V G   +      A +GD ++  VK+  P++   R  ++ A++VR  K  RR DG+++ F+DNA VIVN     +G+ + GP+ +E
Sbjct:   11 ADNTGARKIMCIRVLGGNRKY-----AKIGDTIIGVVKEAIPNMPIKRSDIVRAIVVRTSKTIRRPDGMYIRFDDNAAVIVNLDNNPRGTRVFGPVARE 104          
The following BLAST results are available for this feature:
BLAST of CX300441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 467
Match NameE-valueIdentityDescription
RL14_DESRM4.390e-1137.0450S ribosomal protein L14 OS=Desulfotomaculum redu... [more]
RL14_DESOH4.390e-1138.3850S ribosomal protein L14 OS=Desulfococcus oleovor... [more]
RL14_DESMR4.390e-1136.1150S ribosomal protein L14 OS=Desulfovibrio magneti... [more]
RL14_CYTH34.390e-1138.2450S ribosomal protein L14 OS=Cytophaga hutchinsoni... [more]
RL14_CLOCE4.390e-1137.9650S ribosomal protein L14 OS=Clostridium celluloly... [more]
RL14_CHLTR4.390e-1142.4250S ribosomal protein L14 OS=Chlamydia trachomatis... [more]
RL14_CHLTA4.390e-1142.4250S ribosomal protein L14 OS=Chlamydia trachomatis... [more]
RL14_CAUSK4.390e-1137.9650S ribosomal protein L14 OS=Caulobacter sp. (stra... [more]
RK14_SPIOL4.390e-1136.2750S ribosomal protein L14, chloroplastic OS=Spinac... [more]
RK14_ODOSI4.390e-1136.3650S ribosomal protein L14, chloroplastic OS=Odonte... [more]

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Properties
Property NameValue
Genbank descriptionC07010C07SK SaltLeaf1 Citrus clementina cDNA clone C07010C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300441 ID=CX300441; Name=CX300441; organism=Citrus clementina; type=EST; length=390bp
CTTTAGCTGCGAAAATGTCGAAGCGAGGACGTGGAGGATCAGCAGGTAAC
AAGTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTGTGC
TGACAACACTGGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCA
AAGGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATG
GCTACCGTGAAGAAAGGGAAGCCTGATCTTAGGAAGAAGGTGATGCCCGC
CGTCATTGTAAGGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCA
TGTACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAAATG
AAGGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTG
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