CX300441

Overview
NameCX300441
Unique NameCX300441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length390
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_EUCGG (50S ribosomal protein L14, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl14 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.390e-11
Identity = 36/102 (35.29%), Postives = 62/102 (60.78%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ + G I +E
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDIIVAVIKEALPNTPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_CICAR (50S ribosomal protein L14, chloroplastic OS=Cicer arietinum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.390e-11
Identity = 37/102 (36.27%), Postives = 61/102 (59.80%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADN+GA+ L  I + G   R      A +GD+++A +KK  P+    R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ I   I +E
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AYIGDIIVAVIKKAVPNTPFERSEVIRAVIVRTCKELKRSNGIIIKYDDNAAVVIDKEGNPKGTRIFCAIARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_CHAGL (50S ribosomal protein L14, chloroplastic OS=Chaetosphaeridium globosum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.390e-11
Identity = 35/102 (34.31%), Postives = 61/102 (59.80%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADN+GA+ +  I + G   +        +GD ++  VK+  P++   + +V+ AVIVR  K  +RK+G  + F++NA VI+N +G  +G+ I GP+ +E
Sbjct:    8 LNVADNSGARKIMCIRILGGSNK----KYGHIGDTIIGVVKEAIPNMTLKKSEVVRAVIVRTCKELKRKNGTILRFDENAAVIINQEGNPRGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_CARPA (50S ribosomal protein L14, chloroplastic OS=Carica papaya GN=rpl14 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.390e-11
Identity = 37/102 (36.27%), Postives = 62/102 (60.78%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ I G I +E
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELKRNNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIPRE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RM14_RECAM (60S ribosomal protein L14, mitochondrial OS=Reclinomonas americana GN=RPL14 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.733e-11
Identity = 44/108 (40.74%), Postives = 61/108 (56.48%), Query Frame = 3
Query:   72 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            + V   +  ADN+GAK +  I V G  G   R  S  VGD ++  VK+  P  + K   V  A+IVR +KP  RKDG  + FE+NA V++N +G   G+ I GP+ KE
Sbjct:    2 IQVETMLKVADNSGAKRVQCIKVLG--GSKRRYGS--VGDTIVVAVKECMPRKKVKKGDVKKAIIVRTKKPIYRKDGSTISFENNAVVLINEQGIPIGTRILGPVTKE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_SYNSC (50S ribosomal protein L14 OS=Synechococcus sp. (strain CC9605) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.733e-11
Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADN+GAK +  I V G   R      A VGD+++A VK   P++  K   V+ AV+VR +   RR+ G  + F+DNA VI+N     KG+ + GP+ +E
Sbjct:   11 ADNSGAKRIQCIRVLGTNRRY-----AHVGDVIVAAVKDAAPNMGVKKSDVVKAVVVRTKATMRRETGNSIRFDDNAAVIINDDKNPKGTRVFGPVARE 104          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_SYNPX (50S ribosomal protein L14 OS=Synechococcus sp. (strain WH8102) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.733e-11
Identity = 39/102 (38.24%), Postives = 58/102 (56.86%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ++ ADN+GAK +  I V G   R      A VGD+++A VK   P++  K   V+ AV+VR +   RR  G  + F+DNA VI+N     KG+ + GP+ +E
Sbjct:    8 LSVADNSGAKRIQCIRVLGTNRRY-----AHVGDVIVAAVKDAMPNMGVKKSDVVKAVVVRTKATLRRDTGNSIRFDDNAAVIINADNNPKGTRVFGPVARE 104          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_STRSV (50S ribosomal protein L14 OS=Streptococcus sanguinis (strain SK36) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.733e-11
Identity = 39/99 (39.39%), Postives = 59/99 (59.60%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADN+GA+ +  I V G  GR      A +GD+++A+VK+  P    K   V+ AVIVR +   RRKDG ++ F++NA VI+      +G+ I GP+ +E
Sbjct:   11 ADNSGAREILTIKVLGGSGR----KFANIGDVIVASVKQATPGGAVKKGDVVKAVIVRTKSGARRKDGSYIKFDENAAVIIREDKTPRGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_STRGC (50S ribosomal protein L14 OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.733e-11
Identity = 39/99 (39.39%), Postives = 59/99 (59.60%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADN+GA+ +  I V G  GR      A +GD+++A+VK+  P    K   V+ AVIVR +   RRKDG ++ F++NA VI+      +G+ I GP+ +E
Sbjct:   11 ADNSGAREILTIKVLGGSGR----KFANIGDVIVASVKQATPGGAVKKGDVVKAVIVRTKSGARRKDGSYIKFDENAAVIIREDKTPRGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_PROMT (50S ribosomal protein L14 OS=Prochlorococcus marinus (strain NATL2A) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.733e-11
Identity = 39/99 (39.39%), Postives = 58/99 (58.59%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADN+GAK L  I V G   R      A VGD+++A+VK   P++  K   V+ AV+VR R   RR+ G  + F+DNA V++N     +G+ + GP+ +E
Sbjct:   11 ADNSGAKRLQCIRVLGSNRRY-----AHVGDVIVASVKDAMPNMGVKKSDVVKAVVVRTRATMRRETGNSIRFDDNAAVLINDDQNPRGTRVFGPVARE 104          
The following BLAST results are available for this feature:
BLAST of CX300441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 467
Match NameE-valueIdentityDescription
RK14_EUCGG4.390e-1135.2950S ribosomal protein L14, chloroplastic OS=Eucaly... [more]
RK14_CICAR4.390e-1136.2750S ribosomal protein L14, chloroplastic OS=Cicer ... [more]
RK14_CHAGL4.390e-1134.3150S ribosomal protein L14, chloroplastic OS=Chaeto... [more]
RK14_CARPA4.390e-1136.2750S ribosomal protein L14, chloroplastic OS=Carica... [more]
RM14_RECAM5.733e-1140.7460S ribosomal protein L14, mitochondrial OS=Reclin... [more]
RL14_SYNSC5.733e-1139.3950S ribosomal protein L14 OS=Synechococcus sp. (st... [more]
RL14_SYNPX5.733e-1138.2450S ribosomal protein L14 OS=Synechococcus sp. (st... [more]
RL14_STRSV5.733e-1139.3950S ribosomal protein L14 OS=Streptococcus sanguin... [more]
RL14_STRGC5.733e-1139.3950S ribosomal protein L14 OS=Streptococcus gordoni... [more]
RL14_PROMT5.733e-1139.3950S ribosomal protein L14 OS=Prochlorococcus marin... [more]

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Properties
Property NameValue
Genbank descriptionC07010C07SK SaltLeaf1 Citrus clementina cDNA clone C07010C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300441 ID=CX300441; Name=CX300441; organism=Citrus clementina; type=EST; length=390bp
CTTTAGCTGCGAAAATGTCGAAGCGAGGACGTGGAGGATCAGCAGGTAAC
AAGTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTGTGC
TGACAACACTGGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCA
AAGGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATG
GCTACCGTGAAGAAAGGGAAGCCTGATCTTAGGAAGAAGGTGATGCCCGC
CGTCATTGTAAGGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCA
TGTACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAAATG
AAGGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTG
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