CX300441

Overview
NameCX300441
Unique NameCX300441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length390
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_PROM1 (50S ribosomal protein L14 OS=Prochlorococcus marinus (strain NATL1A) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.733e-11
Identity = 39/99 (39.39%), Postives = 58/99 (58.59%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADN+GAK L  I V G   R      A VGD+++A+VK   P++  K   V+ AV+VR R   RR+ G  + F+DNA V++N     +G+ + GP+ +E
Sbjct:   11 ADNSGAKRLQCIRVLGSNRRY-----AHVGDVIVASVKDAMPNMGVKKSDVVKAVVVRTRATMRRETGNSIRFDDNAAVLINDDQNPRGTRVFGPVARE 104          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_PROAC (50S ribosomal protein L14 OS=Propionibacterium acnes GN=rplN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.733e-11
Identity = 43/99 (43.43%), Postives = 61/99 (61.62%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGAK L  I V G  G   R   A +GD ++ TVK   P  +++K +V+ AV+VR  K  RR DG ++ F++NA V++   GE +G+ I GPI +E
Sbjct:   11 ADNTGAKELLCIRVLG--GSKRRY--AYLGDTIVCTVKDAIPGGNVKKGEVVKAVVVRTVKSHRRPDGSYIKFDENAAVLLKGDGEPRGTRIFGPIARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_MYCA5 (50S ribosomal protein L14 OS=Mycoplasma arthritidis (strain 158L3-1) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.733e-11
Identity = 39/101 (38.61%), Postives = 62/101 (61.39%), Query Frame = 3
Query:   93 NCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            N ADN+GAK + II  K + G + R  S  +GD+V+ TVKK  P       +V+ AVIVR ++   R++G  + F+DNA V++   G ++G+ + GP+ +E
Sbjct:    9 NVADNSGAKEVMII--KNLGGSIVR--STNIGDVVVVTVKKAIPHGFVKEGQVLKAVIVRTKRGLMRENGSHIRFDDNAVVLIKEDGTLRGTRVFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_LACCB (50S ribosomal protein L14 OS=Lactobacillus casei (strain BL23) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.733e-11
Identity = 38/99 (38.38%), Postives = 59/99 (59.60%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADN+GA+ + +I V G   R     +  +GD+V+ATVK+  P     +  V+ AVIVR +   RR DG ++ F++NA VI+N     +G+ I GP+ +E
Sbjct:   11 ADNSGAREILVIKVLGGSYR----KTGNIGDVVVATVKQATPGGVVKKADVVKAVIVRTKSGARRADGSYIKFDENAAVIINADKSPRGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_LACC3 (50S ribosomal protein L14 OS=Lactobacillus casei (strain ATCC 334) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.733e-11
Identity = 38/99 (38.38%), Postives = 59/99 (59.60%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADN+GA+ + +I V G   R     +  +GD+V+ATVK+  P     +  V+ AVIVR +   RR DG ++ F++NA VI+N     +G+ I GP+ +E
Sbjct:   11 ADNSGAREILVIKVLGGSYR----KTGNIGDVVVATVKQATPGGVVKKADVVKAVIVRTKSGARRADGSYIKFDENAAVIINADKSPRGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_HELHP (50S ribosomal protein L14 OS=Helicobacter hepaticus GN=rplN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.733e-11
Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ++ ADN+GAK +  I + G   R      A VGD+++A+VKK  P+ + K   V+ AV+VR +K   R++G  + F+DNA VI++ K E  G+ I GP+ +E
Sbjct:    8 LSVADNSGAKEIMCIKILGGSHRRY----ARVGDVIVASVKKAIPNGKVKKGQVVKAVVVRTKKEIHRENGSLVRFDDNAAVILDAKKEPIGTRIFGPVSRE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_GEOTN (50S ribosomal protein L14 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.733e-11
Identity = 38/99 (38.38%), Postives = 60/99 (60.61%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADN+GA+ + +I V G  GR      A +GD+V+ATVK   P     + +V+ AV+VR ++  RR DG ++ F++NA VI+      +G+ I GP+ +E
Sbjct:   11 ADNSGAREVLVIKVLGGSGRRY----ANIGDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRSDGSYIRFDENACVIIRDDKSPRGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_CORJK (50S ribosomal protein L14 OS=Corynebacterium jeikeium (strain K411) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.733e-11
Identity = 41/100 (41.00%), Postives = 62/100 (62.00%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPK-GEMKGSAITGPIGKE 386
            ADNTGA+ + +I   G  G + R  SA +GD+V+ATVK+  P    K   ++ AVIVR +K  RR DG ++ F++NA VI+     + +G+ I GP+ +E
Sbjct:   11 ADNTGAREILVIRPLG--GSVRR--SAGIGDVVVATVKEAAPGGTVKAGDIVKAVIVRAKKETRRPDGSYIAFDENAAVIIKANDNDPRGTRIFGPVARE 106          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_CHLFF (50S ribosomal protein L14 OS=Chlamydophila felis (strain Fe/C-56) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.733e-11
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGAK +    V G     +R   A VGD+++ +V+  +PD   K   V+ AVIVR R+   RKDG  + F+ N+ VI++ KG  KG+ I GPI +E
Sbjct:   11 ADNTGAKKVKCFKVLGG----SRRRYATVGDIIVCSVRDVEPDSSIKKGDVVKAVIVRTRRDILRKDGSSLRFDTNSCVIIDEKGNPKGTRIFGPIARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_CHLCV (50S ribosomal protein L14 OS=Chlamydophila caviae GN=rplN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.733e-11
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGAK +    V G     +R   A VGD+++ +V+  +PD   K   V+ AVIVR R+   RKDG  + F+ N+ VI++ KG  KG+ I GPI +E
Sbjct:   11 ADNTGAKKVKCFKVLGG----SRRRYATVGDIIVCSVRDVEPDSSIKKGDVVKAVIVRTRRDILRKDGSSLRFDTNSCVIIDEKGNPKGTRIFGPIARE 105          
The following BLAST results are available for this feature:
BLAST of CX300441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 467
Match NameE-valueIdentityDescription
RL14_PROM15.733e-1139.3950S ribosomal protein L14 OS=Prochlorococcus marin... [more]
RL14_PROAC5.733e-1143.4350S ribosomal protein L14 OS=Propionibacterium acn... [more]
RL14_MYCA55.733e-1138.6150S ribosomal protein L14 OS=Mycoplasma arthritidi... [more]
RL14_LACCB5.733e-1138.3850S ribosomal protein L14 OS=Lactobacillus casei (... [more]
RL14_LACC35.733e-1138.3850S ribosomal protein L14 OS=Lactobacillus casei (... [more]
RL14_HELHP5.733e-1139.2250S ribosomal protein L14 OS=Helicobacter hepaticu... [more]
RL14_GEOTN5.733e-1138.3850S ribosomal protein L14 OS=Geobacillus thermoden... [more]
RL14_CORJK5.733e-1141.0050S ribosomal protein L14 OS=Corynebacterium jeike... [more]
RL14_CHLFF5.733e-1142.4250S ribosomal protein L14 OS=Chlamydophila felis (... [more]
RL14_CHLCV5.733e-1142.4250S ribosomal protein L14 OS=Chlamydophila caviae ... [more]

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Properties
Property NameValue
Genbank descriptionC07010C07SK SaltLeaf1 Citrus clementina cDNA clone C07010C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300441 ID=CX300441; Name=CX300441; organism=Citrus clementina; type=EST; length=390bp
CTTTAGCTGCGAAAATGTCGAAGCGAGGACGTGGAGGATCAGCAGGTAAC
AAGTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTGTGC
TGACAACACTGGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCA
AAGGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATG
GCTACCGTGAAGAAAGGGAAGCCTGATCTTAGGAAGAAGGTGATGCCCGC
CGTCATTGTAAGGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCA
TGTACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAAATG
AAGGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTG
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