CX300441

Overview
NameCX300441
Unique NameCX300441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length390
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_CHLAB (50S ribosomal protein L14 OS=Chlamydophila abortus GN=rplN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.733e-11
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGAK +    V G     +R   A VGD+++ +V+  +PD   K   V+ AVIVR R+   RKDG  + F+ N+ VI++ KG  KG+ I GPI +E
Sbjct:   11 ADNTGAKRVKCFKVLGG----SRRRYATVGDVIVCSVRDVEPDSSVKKGDVVKAVIVRTRRNILRKDGSSLKFDTNSCVIIDEKGNPKGTRIFGPIARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_CALS8 (50S ribosomal protein L14 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.733e-11
Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGAK +  I V G   R      A +GD+++ +VK   P     +  V+ AVIVR RK  RR+DG ++ F+DNA V++      +G+ I GP+ +E
Sbjct:   11 ADNTGAKEVMCIRVLGGSNR----KFANIGDIIVCSVKDATPGGVVKKGDVVKAVIVRTRKGIRREDGTYIRFDDNAAVLIREDKTPRGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_BACWK (50S ribosomal protein L14 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.733e-11
Identity = 38/99 (38.38%), Postives = 58/99 (58.59%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADN+GA+ L  I V G  GR      A +GD+++ATVK+  P     +  V+ AV+VR +   RR DG ++ F++NA VI+      +G+ I GP+ +E
Sbjct:   11 ADNSGARELLTIKVLGGSGR----KYAYIGDIIVATVKQATPGGVVKKGDVVKAVVVRTKSGARRPDGSYIKFDENAAVIIKDDKSPRGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_VITVI (50S ribosomal protein L14, chloroplastic OS=Vitis vinifera GN=rpl14 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.733e-11
Identity = 38/102 (37.25%), Postives = 63/102 (61.76%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P++   R +V+ AVIVR  K  +R +G+ + ++DNA VI++ +G  KG+ I G I +E
Sbjct:    8 LNVADNSGARELMCIRIIGTSNRRY----AHIGDVIVAVIKEVVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIVRE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_SOYBN (50S ribosomal protein L14, chloroplastic OS=Glycine max GN=rpl14 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.733e-11
Identity = 37/102 (36.27%), Postives = 61/102 (59.80%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADN+GA+ L  I + G   R      A +GD+V+A +K+  P+    R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ I   I +E
Sbjct:    8 LNVADNSGARELMCIRILGASNRRY----AYIGDIVVAVIKQAVPNTNLERSEVIRAVIVRTCKELKRSNGIIIQYDDNAAVVIDQEGNPKGTRIFCAIARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_PHAVU (50S ribosomal protein L14, chloroplastic OS=Phaseolus vulgaris GN=rpl14 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.733e-11
Identity = 37/102 (36.27%), Postives = 61/102 (59.80%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADN+GA+ L  I + G   R      A +GD+V+A +K+  P+    R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ I   I +E
Sbjct:    8 LNVADNSGARKLMCIRILGASNRRY----AYIGDIVVAVIKQAVPNTNLERSEVIRAVIVRTCKQLKRSNGIIIQYDDNAAVVIDQEGNPKGTRIFCAIARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_GUIAB (50S ribosomal protein L14, chloroplastic OS=Guizotia abyssinica GN=rpl14 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.733e-11
Identity = 36/102 (35.29%), Postives = 62/102 (60.78%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADN+GA+ L  I + G   R      A +GD+++A +K   P++   R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ + G I +E
Sbjct:    8 LNVADNSGARELMCIRIIGASHRRY----AHIGDVIVAVIKDAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_CERDE (50S ribosomal protein L14, chloroplastic OS=Ceratophyllum demersum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.733e-11
Identity = 35/102 (34.31%), Postives = 62/102 (60.78%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADN+GA+ L  I + G          A +GD+++A +K+  P++   R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ + G I +E
Sbjct:    8 LNVADNSGARELMCIRILGASNHRY----AHIGDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_TREDE (50S ribosomal protein L14 OS=Treponema denticola GN=rplN PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11
Identity = 45/108 (41.67%), Postives = 62/108 (57.41%), Query Frame = 3
Query:   72 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP-DLRKK--VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            + V   +N ADN+GAK +  I V G  G   R   A +GD+++  VK+  P  + KK  V  AVIVR  K +RR DG ++ F+DNA VIV+     KG  I GP+ +E
Sbjct:    2 IQVETRLNVADNSGAKLVECIKVIG--GSKRRY--AGIGDIIVVAVKEALPTSVIKKGTVEKAVIVRVSKEYRRPDGTYIRFDDNACVIVDDNKNPKGKRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_THETH (50S ribosomal protein L14 OS=Thermus thermophilus GN=rplN PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11
Identity = 40/99 (40.40%), Postives = 62/99 (62.63%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGA+ +  I V  +KG  +    A VGD+++A+VK+  P    K   V+ AV+VR +K  +R DG  + F+DNA VI+N + E +G+ + GP+ +E
Sbjct:   11 ADNTGARKIMCIRV--LKG--SNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEVKRPDGSAIRFDDNAAVIINNQLEPRGTRVFGPVARE 105          
The following BLAST results are available for this feature:
BLAST of CX300441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 467
Match NameE-valueIdentityDescription
RL14_CHLAB5.733e-1142.4250S ribosomal protein L14 OS=Chlamydophila abortus... [more]
RL14_CALS85.733e-1139.3950S ribosomal protein L14 OS=Caldicellulosiruptor ... [more]
RL14_BACWK5.733e-1138.3850S ribosomal protein L14 OS=Bacillus weihenstepha... [more]
RK14_VITVI5.733e-1137.2550S ribosomal protein L14, chloroplastic OS=Vitis ... [more]
RK14_SOYBN5.733e-1136.2750S ribosomal protein L14, chloroplastic OS=Glycin... [more]
RK14_PHAVU5.733e-1136.2750S ribosomal protein L14, chloroplastic OS=Phaseo... [more]
RK14_GUIAB5.733e-1135.2950S ribosomal protein L14, chloroplastic OS=Guizot... [more]
RK14_CERDE5.733e-1134.3150S ribosomal protein L14, chloroplastic OS=Cerato... [more]
RL14_TREDE7.488e-1141.6750S ribosomal protein L14 OS=Treponema denticola G... [more]
RL14_THETH7.488e-1140.4050S ribosomal protein L14 OS=Thermus thermophilus ... [more]

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Properties
Property NameValue
Genbank descriptionC07010C07SK SaltLeaf1 Citrus clementina cDNA clone C07010C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300441 ID=CX300441; Name=CX300441; organism=Citrus clementina; type=EST; length=390bp
CTTTAGCTGCGAAAATGTCGAAGCGAGGACGTGGAGGATCAGCAGGTAAC
AAGTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTGTGC
TGACAACACTGGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCA
AAGGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATG
GCTACCGTGAAGAAAGGGAAGCCTGATCTTAGGAAGAAGGTGATGCCCGC
CGTCATTGTAAGGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCA
TGTACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAAATG
AAGGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTG
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