CX300441

Overview
NameCX300441
Unique NameCX300441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length390
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3742 contig Ccv1_Contig3742:14..403. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_METST (50S ribosomal protein L14P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.961e-27
Identity = 61/109 (55.96%), Postives = 78/109 (71.56%), Query Frame = 3
Query:   60 MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +S  LP+ A + C DNTGA+ + IISVKG KG   RL SA VGDMV+ +VKKG  D+R++V  AV+VRQ+K +RR DG+ + FEDNA VI+   G +KGS I GPI KE
Sbjct:    8 VSKSLPIGARLKCIDNTGAREVEIISVKGFKGVRRRLASAGVGDMVVISVKKGTADMRREVTTAVVVRQKKEYRRADGLRVKFEDNAAVIITEDGVLKGSEIRGPIAKE 116          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_METM5 (50S ribosomal protein L14P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.961e-27
Identity = 58/105 (55.24%), Postives = 76/105 (72.38%), Query Frame = 3
Query:   72 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            LP  A + CADNTGAK L +I+VK   G + RLP+  VG MV  +VKKG P++RK+V+PA+I+RQ+K ++R DG  + FEDNA VIV P+G  KGS I GP+ KE
Sbjct:   12 LPNGARLVCADNTGAKELEVIAVKNYVGTVRRLPAGGVGHMVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIVTPEGTPKGSEIKGPVSKE 116          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_PYRHO (50S ribosomal protein L14P OS=Pyrococcus horikoshii GN=rpl14p PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 3.345e-27
Identity = 62/125 (49.60%), Postives = 87/125 (69.60%), Query Frame = 3
Query:   15 MSKRGRGGSAG-NKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            M+K+G G + G +  R +  +P+ A +  ADN+GAK + +I V    G   RL SA VGDMV+ATVKKG+PD+R +V+ AVI+RQRK +RR DG+ + FEDNA VIV P+G  +G+ I GP+ +E
Sbjct:    1 MAKKGAGATRGISPVRPTRAIPIGAYLTVADNSGAKVIQVIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRAVIIRQRKEYRRLDGMRVKFEDNAAVIVTPEGVPRGTEIRGPVARE 125          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_PYRAB (50S ribosomal protein L14P OS=Pyrococcus abyssi GN=rpl14p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.345e-27
Identity = 63/125 (50.40%), Postives = 86/125 (68.80%), Query Frame = 3
Query:   15 MSKRGRGGSAG-NKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            M+K+G G + G    R +  +PV A +  ADN+GAK + +I V    G   RL SA VGDMV+ATVKKG+PD+R +V+ AVI+RQRK +RR DG+ + FEDNA VIV P+G  +G+ I GP+ +E
Sbjct:    1 MAKKGAGATRGITPVRPTRAIPVGAYLTVADNSGAKVIQVIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRAVIIRQRKEYRRLDGMRIKFEDNAAVIVTPEGVPRGTEIRGPVARE 125          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_ARCFU (50S ribosomal protein L14P OS=Archaeoglobus fulgidus GN=rpl14p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.369e-27
Identity = 61/105 (58.10%), Postives = 76/105 (72.38%), Query Frame = 3
Query:   72 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            LP  A + CADNTGA+ L II+VKG KG   R P+A VGD+V+ TVKKG P++RK+V  AVIVRQRK +RR DG  + FEDNA VI N +GE +GS I G + +E
Sbjct:   12 LPTGARLVCADNTGARELEIIAVKGYKGVRRRYPAAGVGDIVVVTVKKGTPEIRKQVHYAVIVRQRKEYRRPDGTRVKFEDNAAVITNERGEPRGSEIRGAVARE 116          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_CENSY (50S ribosomal protein L14P OS=Cenarchaeum symbiosum GN=rpl14p PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.271e-26
Identity = 66/124 (53.23%), Postives = 85/124 (68.55%), Query Frame = 3
Query:   24 RGRGGSAG-NKFR--MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            R RG + G  +FR  ++  LPV A V CADN+GAK L II V+  K R++RLP+A VGD V   VKKG  +LRK+V  AVI+RQ+ P RR +GV + FEDNA V+  P+GEMKG+ I GP+  E
Sbjct:    5 RSRGKAKGVEEFRPYVTRALPVGARVTCADNSGAKVLEIIMVQKAKTRVSRLPAAAVGDYVNVVVKKGPAELRKQVHGAVIIRQKYPVRRLNGVRVAFEDNAAVLTTPEGEMKGTDIKGPVAAE 128          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_METTP (50S ribosomal protein L14P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.832e-26
Identity = 55/114 (48.25%), Postives = 79/114 (69.30%), Query Frame = 3
Query:   45 GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            GNK ++   +     + CADNTGA+ L+++SVK  +G  NR P A +GDMV+ +VKKG P++RK++  AVI+RQ+K +RR DG+ + FEDNA VI +  G  KGS I GP+ +E
Sbjct:    3 GNKAKIPRSINTGTYLECADNTGARTLFVVSVKKYRGVKNRQPCAGIGDMVVVSVKKGTPEMRKQIFNAVIIRQKKEFRRPDGLRVKFEDNAAVITDDAGVPKGSEIKGPVARE 116          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_IGNH4 (50S ribosomal protein L14P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.832e-26
Identity = 61/118 (51.69%), Postives = 81/118 (68.64%), Query Frame = 3
Query:   39 SAGNKFRMSL--GLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ++ NK R  +  GL V + V   DN+GAK   II V G  GRL R+P A VGDMV+ TVKKG P++R +V+ A++VRQRKP+RR DG ++ FEDNA VIV+  G  +GS I GP+ +E
Sbjct:    4 ASANKSRRKVVTGLQVGSYVKVTDNSGAKVAMIIGVPGYHGRLRRIPPAGVGDMVVVTVKKGTPEMRHQVVRAIVVRQRKPFRRPDGTWVAFEDNAVVIVSEDGTPRGSEIRGPVARE 121          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_SULTO (50S ribosomal protein L14P OS=Sulfolobus tokodaii GN=rpl14p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.699e-26
Identity = 60/114 (52.63%), Postives = 78/114 (68.42%), Query Frame = 3
Query:   45 GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            G++  ++ GL    TV  ADN+GAK   II + G KG L R+P A + D+VM +V+KG P++RK+   AVIVRQR P+RR DG ++ FEDNA VIVNP G  KG+ I GPI KE
Sbjct:   12 GSRKGLTPGLQHYTTVTVADNSGAKEAVIIGIYGYKGVLRRIPFANIADLVMVSVRKGTPEVRKQKFKAVIVRQRMPFRRPDGTWIAFEDNAVVIVNPDGTPKGTEIRGPIAKE 125          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_METS5 (50S ribosomal protein L14P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.406e-25
Identity = 55/99 (55.56%), Postives = 73/99 (73.74%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            VN +DN+GAK   IISV G +G L R+P A VGD+VM +V+KG PD+RK+   AV++RQR P+RR DG ++ F+DNA VIVNP G  KG+ I GP+ +E
Sbjct:   24 VNVSDNSGAKEAMIISVFGYRGALRRVPYANVGDLVMVSVRKGAPDVRKQKFKAVVIRQRMPFRRPDGTWISFDDNAVVIVNPDGTAKGTEIRGPVARE 122          
The following BLAST results are available for this feature:
BLAST of CX300441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 467
Match NameE-valueIdentityDescription
RL14_METST1.961e-2755.9650S ribosomal protein L14P OS=Methanosphaera stadt... [more]
RL14_METM51.961e-2755.2450S ribosomal protein L14P OS=Methanococcus maripa... [more]
RL14_PYRHO3.345e-2749.6050S ribosomal protein L14P OS=Pyrococcus horikoshi... [more]
RL14_PYRAB3.345e-2750.4050S ribosomal protein L14P OS=Pyrococcus abyssi GN... [more]
RL14_ARCFU4.369e-2758.1050S ribosomal protein L14P OS=Archaeoglobus fulgid... [more]
RL14_CENSY1.271e-2653.2350S ribosomal protein L14P OS=Cenarchaeum symbiosu... [more]
RL14_METTP2.832e-2648.2550S ribosomal protein L14P OS=Methanosaeta thermop... [more]
RL14_IGNH42.832e-2651.6950S ribosomal protein L14P OS=Ignicoccus hospitali... [more]
RL14_SULTO3.699e-2652.6350S ribosomal protein L14P OS=Sulfolobus tokodaii ... [more]
RL14_METS51.406e-2555.5650S ribosomal protein L14P OS=Metallosphaera sedul... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07010C07SK SaltLeaf1 Citrus clementina cDNA clone C07010C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300441 ID=CX300441; Name=CX300441; organism=Citrus clementina; type=EST; length=390bp
CTTTAGCTGCGAAAATGTCGAAGCGAGGACGTGGAGGATCAGCAGGTAAC
AAGTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTGTGC
TGACAACACTGGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCA
AAGGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATG
GCTACCGTGAAGAAAGGGAAGCCTGATCTTAGGAAGAAGGTGATGCCCGC
CGTCATTGTAAGGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCA
TGTACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAAATG
AAGGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTG
back to top