CX300441
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_THET8 (50S ribosomal protein L14 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rplN PE=1 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11 Identity = 40/99 (40.40%), Postives = 62/99 (62.63%), Query Frame = 3 Query: 99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386 ADNTGA+ + I V +KG + A VGD+++A+VK+ P K V+ AV+VR +K +R DG + F+DNA VI+N + E +G+ + GP+ +E Sbjct: 11 ADNTGARKIMCIRV--LKG--SNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEIKRPDGSAIRFDDNAAVIINNQLEPRGTRVFGPVARE 105
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_THET2 (50S ribosomal protein L14 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rplN PE=1 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11 Identity = 40/99 (40.40%), Postives = 62/99 (62.63%), Query Frame = 3 Query: 99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386 ADNTGA+ + I V +KG + A VGD+++A+VK+ P K V+ AV+VR +K +R DG + F+DNA VI+N + E +G+ + GP+ +E Sbjct: 11 ADNTGARKIMCIRV--LKG--SNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEVKRPDGSAIRFDDNAAVIINNQLEPRGTRVFGPVARE 105
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_THESQ (50S ribosomal protein L14 OS=Thermotoga sp. (strain RQ2) GN=rplN PE=3 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11 Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = 3 Query: 90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386 +N ADN+GAK L +I V G + VGD+V+ +V++ P D++K V+ AVIVR +K RR DG ++ F+DNA V+++ +G+ I GP+ +E Sbjct: 8 LNVADNSGAKKLRVIRVIGGFHK----KYGTVGDIVVCSVREAIPNSDVKKGDVVRAVIVRTKKEIRRSDGTYIRFDDNAAVLIDKFNAPRGTRIFGPVARE 105
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_THEP1 (50S ribosomal protein L14 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplN PE=3 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11 Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = 3 Query: 90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386 +N ADN+GAK L +I V G + VGD+V+ +V++ P D++K V+ AVIVR +K RR DG ++ F+DNA V+++ +G+ I GP+ +E Sbjct: 8 LNVADNSGAKKLRVIRVIGGFHK----KYGTVGDIVVCSVREAIPNSDVKKGDVVRAVIVRTKKEIRRSDGTYIRFDDNAAVLIDKFNAPRGTRIFGPVARE 105
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_THEMA (50S ribosomal protein L14 OS=Thermotoga maritima GN=rplN PE=3 SV=2) HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11 Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = 3 Query: 90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386 +N ADN+GAK L +I V G + VGD+V+ +V++ P D++K V+ AVIVR +K RR DG ++ F+DNA V+++ +G+ I GP+ +E Sbjct: 8 LNVADNSGAKKLRVIRVIGGFHK----KYGTVGDIVVCSVREAIPNSDVKKGDVVRAVIVRTKKEIRRNDGTYIRFDDNAAVLIDKFNAPRGTRIFGPVARE 105
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_THEAQ (50S ribosomal protein L14 OS=Thermus aquaticus GN=rplN PE=3 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11 Identity = 40/99 (40.40%), Postives = 62/99 (62.63%), Query Frame = 3 Query: 99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386 ADNTGA+ + I V +KG + A VGD+++A+VK+ P K V+ AV+VR +K +R DG + F+DNA VI+N + E +G+ + GP+ +E Sbjct: 11 ADNTGARKIMCIRV--LKG--SNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEVKRPDGSAIRFDDNAAVIINNQLEPRGTRVFGPVARE 105
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_SYNWW (50S ribosomal protein L14 OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=rplN PE=3 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11 Identity = 38/98 (38.78%), Postives = 58/98 (59.18%), Query Frame = 3 Query: 102 DNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386 DNTGAK + + V G G R S VGD+++A+VK+ P + ++ AV+VR +K RR DG ++ F +NA VI++ KG+ I GP+ +E Sbjct: 12 DNTGAKKVLCVKVLG--GSTRRYAS--VGDIIVASVKEASPGGVVKKGDLVKAVVVRTKKEIRRADGSYIAFSENAAVIIDDNNNPKGTRIFGPVARE 105
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_SYNS9 (50S ribosomal protein L14 OS=Synechococcus sp. (strain CC9902) GN=rplN PE=3 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11 Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = 3 Query: 99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386 ADN+GAK + I V G R A VGD+++A VK P++ K V+ AV+VR + RR+ G + F+DNA VI+N KG+ + GP+ +E Sbjct: 11 ADNSGAKRIQCIRVLGTNRRY-----AHVGDVIVAAVKDAMPNMGVKKSDVVKAVVVRTKATLRRETGNSIRFDDNAAVIINDDKNPKGTRVFGPVARE 104
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_RHOCS (50S ribosomal protein L14 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplN PE=3 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11 Identity = 42/108 (38.89%), Postives = 62/108 (57.41%), Query Frame = 3 Query: 72 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386 + + + ADN+GA+ + I V G GR A VGD+++ +VK+ P R K V AVIVR K RR+DG + F+ NA V++N +GE G+ I GP+ +E Sbjct: 2 IQMQTNLEVADNSGARRVQCIKVLGGAGRR----FASVGDIIVVSVKEAIPRGRVKKGDVHRAVIVRTAKEIRREDGSCIRFDRNAAVLINKQGEPIGTRIFGPVTRE 105
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_PETMO (50S ribosomal protein L14 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplN PE=3 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11 Identity = 40/102 (39.22%), Postives = 62/102 (60.78%), Query Frame = 3 Query: 90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386 + ADN+GAK L +I V G + VGD V+ +V++ P DL+K +V+ AVIVR +K RRKDG ++ F+DNA V+++ G+ + GP+ +E Sbjct: 8 IRVADNSGAKVLRVIKVLGGFHK----SKGTVGDTVVCSVREAIPHTDLKKGQVVQAVIVRTKKEIRRKDGTYIRFDDNAAVLIDKNKLPLGTRVFGPVARE 105 The following BLAST results are available for this feature:
BLAST of CX300441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 467
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300441 ID=CX300441; Name=CX300441; organism=Citrus clementina; type=EST; length=390bpback to top |