CX300441

Overview
NameCX300441
Unique NameCX300441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length390
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_THET8 (50S ribosomal protein L14 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rplN PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11
Identity = 40/99 (40.40%), Postives = 62/99 (62.63%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGA+ +  I V  +KG  +    A VGD+++A+VK+  P    K   V+ AV+VR +K  +R DG  + F+DNA VI+N + E +G+ + GP+ +E
Sbjct:   11 ADNTGARKIMCIRV--LKG--SNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEIKRPDGSAIRFDDNAAVIINNQLEPRGTRVFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_THET2 (50S ribosomal protein L14 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rplN PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11
Identity = 40/99 (40.40%), Postives = 62/99 (62.63%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGA+ +  I V  +KG  +    A VGD+++A+VK+  P    K   V+ AV+VR +K  +R DG  + F+DNA VI+N + E +G+ + GP+ +E
Sbjct:   11 ADNTGARKIMCIRV--LKG--SNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEVKRPDGSAIRFDDNAAVIINNQLEPRGTRVFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_THESQ (50S ribosomal protein L14 OS=Thermotoga sp. (strain RQ2) GN=rplN PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11
Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADN+GAK L +I V G   +        VGD+V+ +V++  P  D++K  V+ AVIVR +K  RR DG ++ F+DNA V+++     +G+ I GP+ +E
Sbjct:    8 LNVADNSGAKKLRVIRVIGGFHK----KYGTVGDIVVCSVREAIPNSDVKKGDVVRAVIVRTKKEIRRSDGTYIRFDDNAAVLIDKFNAPRGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_THEP1 (50S ribosomal protein L14 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplN PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11
Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADN+GAK L +I V G   +        VGD+V+ +V++  P  D++K  V+ AVIVR +K  RR DG ++ F+DNA V+++     +G+ I GP+ +E
Sbjct:    8 LNVADNSGAKKLRVIRVIGGFHK----KYGTVGDIVVCSVREAIPNSDVKKGDVVRAVIVRTKKEIRRSDGTYIRFDDNAAVLIDKFNAPRGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_THEMA (50S ribosomal protein L14 OS=Thermotoga maritima GN=rplN PE=3 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11
Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADN+GAK L +I V G   +        VGD+V+ +V++  P  D++K  V+ AVIVR +K  RR DG ++ F+DNA V+++     +G+ I GP+ +E
Sbjct:    8 LNVADNSGAKKLRVIRVIGGFHK----KYGTVGDIVVCSVREAIPNSDVKKGDVVRAVIVRTKKEIRRNDGTYIRFDDNAAVLIDKFNAPRGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_THEAQ (50S ribosomal protein L14 OS=Thermus aquaticus GN=rplN PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11
Identity = 40/99 (40.40%), Postives = 62/99 (62.63%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGA+ +  I V  +KG  +    A VGD+++A+VK+  P    K   V+ AV+VR +K  +R DG  + F+DNA VI+N + E +G+ + GP+ +E
Sbjct:   11 ADNTGARKIMCIRV--LKG--SNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEVKRPDGSAIRFDDNAAVIINNQLEPRGTRVFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_SYNWW (50S ribosomal protein L14 OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=rplN PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11
Identity = 38/98 (38.78%), Postives = 58/98 (59.18%), Query Frame = 3
Query:  102 DNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            DNTGAK +  + V G  G   R  S  VGD+++A+VK+  P     +  ++ AV+VR +K  RR DG ++ F +NA VI++     KG+ I GP+ +E
Sbjct:   12 DNTGAKKVLCVKVLG--GSTRRYAS--VGDIIVASVKEASPGGVVKKGDLVKAVVVRTKKEIRRADGSYIAFSENAAVIIDDNNNPKGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_SYNS9 (50S ribosomal protein L14 OS=Synechococcus sp. (strain CC9902) GN=rplN PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11
Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADN+GAK +  I V G   R      A VGD+++A VK   P++  K   V+ AV+VR +   RR+ G  + F+DNA VI+N     KG+ + GP+ +E
Sbjct:   11 ADNSGAKRIQCIRVLGTNRRY-----AHVGDVIVAAVKDAMPNMGVKKSDVVKAVVVRTKATLRRETGNSIRFDDNAAVIINDDKNPKGTRVFGPVARE 104          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_RHOCS (50S ribosomal protein L14 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplN PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11
Identity = 42/108 (38.89%), Postives = 62/108 (57.41%), Query Frame = 3
Query:   72 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            + +   +  ADN+GA+ +  I V G  GR      A VGD+++ +VK+  P  R K   V  AVIVR  K  RR+DG  + F+ NA V++N +GE  G+ I GP+ +E
Sbjct:    2 IQMQTNLEVADNSGARRVQCIKVLGGAGRR----FASVGDIIVVSVKEAIPRGRVKKGDVHRAVIVRTAKEIRREDGSCIRFDRNAAVLINKQGEPIGTRIFGPVTRE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_PETMO (50S ribosomal protein L14 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplN PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11
Identity = 40/102 (39.22%), Postives = 62/102 (60.78%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +  ADN+GAK L +I V G   +        VGD V+ +V++  P  DL+K +V+ AVIVR +K  RRKDG ++ F+DNA V+++      G+ + GP+ +E
Sbjct:    8 IRVADNSGAKVLRVIKVLGGFHK----SKGTVGDTVVCSVREAIPHTDLKKGQVVQAVIVRTKKEIRRKDGTYIRFDDNAAVLIDKNKLPLGTRVFGPVARE 105          
The following BLAST results are available for this feature:
BLAST of CX300441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 467
Match NameE-valueIdentityDescription
RL14_THET87.488e-1140.4050S ribosomal protein L14 OS=Thermus thermophilus ... [more]
RL14_THET27.488e-1140.4050S ribosomal protein L14 OS=Thermus thermophilus ... [more]
RL14_THESQ7.488e-1139.2250S ribosomal protein L14 OS=Thermotoga sp. (strai... [more]
RL14_THEP17.488e-1139.2250S ribosomal protein L14 OS=Thermotoga petrophila... [more]
RL14_THEMA7.488e-1139.2250S ribosomal protein L14 OS=Thermotoga maritima G... [more]
RL14_THEAQ7.488e-1140.4050S ribosomal protein L14 OS=Thermus aquaticus GN=... [more]
RL14_SYNWW7.488e-1138.7850S ribosomal protein L14 OS=Syntrophomonas wolfei... [more]
RL14_SYNS97.488e-1139.3950S ribosomal protein L14 OS=Synechococcus sp. (st... [more]
RL14_RHOCS7.488e-1138.8950S ribosomal protein L14 OS=Rhodospirillum centen... [more]
RL14_PETMO7.488e-1139.2250S ribosomal protein L14 OS=Petrotoga mobilis (st... [more]

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Properties
Property NameValue
Genbank descriptionC07010C07SK SaltLeaf1 Citrus clementina cDNA clone C07010C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300441 ID=CX300441; Name=CX300441; organism=Citrus clementina; type=EST; length=390bp
CTTTAGCTGCGAAAATGTCGAAGCGAGGACGTGGAGGATCAGCAGGTAAC
AAGTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTGTGC
TGACAACACTGGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCA
AAGGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATG
GCTACCGTGAAGAAAGGGAAGCCTGATCTTAGGAAGAAGGTGATGCCCGC
CGTCATTGTAAGGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCA
TGTACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAAATG
AAGGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTG
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