CX300441

Overview
NameCX300441
Unique NameCX300441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length390
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_MOOTA (50S ribosomal protein L14 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplN PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11
Identity = 39/98 (39.80%), Postives = 59/98 (60.20%), Query Frame = 3
Query:  102 DNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            DNTGA+ L  I V G  G   R  S  VGD+++A+VK+  P     +  V+ AV+VR +K  +R DG ++ F +NA VI+N +   +G+ I GP+ +E
Sbjct:   12 DNTGARKLMCIRVLG--GSKRRYAS--VGDVIIASVKEATPGGVVKKGDVVRAVVVRTKKAVKRPDGSYIRFNENAAVIINEQNNPRGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_LACDB (50S ribosomal protein L14 OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=rplN PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11
Identity = 38/99 (38.38%), Postives = 59/99 (59.60%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADN+GA+ L +I V G   R     +  +GD+V+A VK+  P     +  V+ AVIVR +   RR+DG ++ F++NA VI+N     +G+ I GP+ +E
Sbjct:   11 ADNSGARELLVIRVMGGSKR----KTGNIGDIVVAAVKQATPGGVVKKGDVVKAVIVRTKSGARREDGSYIKFDENAAVIINADKSPRGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_LACDA (50S ribosomal protein L14 OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=rplN PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11
Identity = 38/99 (38.38%), Postives = 59/99 (59.60%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADN+GA+ L +I V G   R     +  +GD+V+A VK+  P     +  V+ AVIVR +   RR+DG ++ F++NA VI+N     +G+ I GP+ +E
Sbjct:   11 ADNSGARELLVIRVMGGSKR----KTGNIGDIVVAAVKQATPGGVVKKGDVVKAVIVRTKSGARREDGSYIKFDENAAVIINADKSPRGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_GEOMG (50S ribosomal protein L14 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rplN PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11
Identity = 38/102 (37.25%), Postives = 63/102 (61.76%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ++ ADN+GA+ L+ I V G   R      A +GD+++A+V++  P+ + K   V+ AVIVR  K   R DG ++ F+DN+ V++N + E  G+ I GP+ +E
Sbjct:    8 LDVADNSGARKLFCIKVLGGSKR----KYAGIGDIIVASVREAIPNSKVKKGDVVKAVIVRTAKEVGRLDGSYIRFDDNSAVVINNQREPVGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_GEOKA (50S ribosomal protein L14 OS=Geobacillus kaustophilus GN=rplN PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11
Identity = 38/99 (38.38%), Postives = 60/99 (60.61%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADN+GA+ + +I V G  GR      A +GD+V+ATVK   P     + +V+ AV+VR ++  RR DG ++ F++NA VI+      +G+ I GP+ +E
Sbjct:   11 ADNSGAREVLVIKVLGGSGRRY----ANIGDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRPDGSYIRFDENACVIIRDDKSPRGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_CHLTB (50S ribosomal protein L14 OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=rplN PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11
Identity = 41/99 (41.41%), Postives = 58/99 (58.59%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGAK +    V G     +R   A VGD+++ +V+  +PD   K   V+ AVIVR R    RKDG  + F+ N+ VI++ KG  KG+ I GP+ +E
Sbjct:   11 ADNTGAKKVKCFKVLGG----SRRRYATVGDVIVCSVRDIEPDSSVKKGDVVKAVIVRTRNDIHRKDGSTLRFDTNSCVIIDDKGNPKGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_CHLT2 (50S ribosomal protein L14 OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=rplN PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11
Identity = 41/99 (41.41%), Postives = 58/99 (58.59%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGAK +    V G     +R   A VGD+++ +V+  +PD   K   V+ AVIVR R    RKDG  + F+ N+ VI++ KG  KG+ I GP+ +E
Sbjct:   11 ADNTGAKKVKCFKVLGG----SRRRYATVGDVIVCSVRDIEPDSSVKKGDVVKAVIVRTRNDIHRKDGSTLRFDTNSCVIIDDKGNPKGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_CAUCR (50S ribosomal protein L14 OS=Caulobacter crescentus GN=rplN PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11
Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 3
Query:   72 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            + +   +  ADN+GA+ +  I V G  GR      A VGD+++ +VK+  P  R K   V+ AV+VR  +  +RKDG  + F+ NA VIVN + E  G+ I GP+ +E
Sbjct:    2 IQMQTNLEVADNSGARRVMCIKVLGGAGRRY----ASVGDVIVVSVKEAIPRGRVKKGDVLRAVVVRVNQNLKRKDGSVIRFDKNAAVIVNKQSEPVGTRIFGPVPRE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_CAUCN (50S ribosomal protein L14 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rplN PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11
Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 3
Query:   72 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            + +   +  ADN+GA+ +  I V G  GR      A VGD+++ +VK+  P  R K   V+ AV+VR  +  +RKDG  + F+ NA VIVN + E  G+ I GP+ +E
Sbjct:    2 IQMQTNLEVADNSGARRVMCIKVLGGAGRRY----ASVGDVIVVSVKEAIPRGRVKKGDVLRAVVVRVNQNLKRKDGSVIRFDKNAAVIVNKQSEPVGTRIFGPVPRE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_CAMFF (50S ribosomal protein L14 OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=rplN PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11
Identity = 41/99 (41.41%), Postives = 62/99 (62.63%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADN+GAK L  I V G  G   R  S  +GD+++ +VKK  P+ + K   V+ AV+VR +K  +R +G  + F++NA VI++ K E  G+ I GP+G+E
Sbjct:   11 ADNSGAKELMCIKVLG--GSKRRYAS--LGDIIVCSVKKALPNGKIKKGQVVKAVVVRTKKEVQRANGSLIRFDENAAVILDNKKEPVGTRIFGPVGRE 105          
The following BLAST results are available for this feature:
BLAST of CX300441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 467
Match NameE-valueIdentityDescription
RL14_MOOTA7.488e-1139.8050S ribosomal protein L14 OS=Moorella thermoacetic... [more]
RL14_LACDB7.488e-1138.3850S ribosomal protein L14 OS=Lactobacillus delbrue... [more]
RL14_LACDA7.488e-1138.3850S ribosomal protein L14 OS=Lactobacillus delbrue... [more]
RL14_GEOMG7.488e-1137.2550S ribosomal protein L14 OS=Geobacter metalliredu... [more]
RL14_GEOKA7.488e-1138.3850S ribosomal protein L14 OS=Geobacillus kaustophi... [more]
RL14_CHLTB7.488e-1141.4150S ribosomal protein L14 OS=Chlamydia trachomatis... [more]
RL14_CHLT27.488e-1141.4150S ribosomal protein L14 OS=Chlamydia trachomatis... [more]
RL14_CAUCR7.488e-1137.9650S ribosomal protein L14 OS=Caulobacter crescentu... [more]
RL14_CAUCN7.488e-1137.9650S ribosomal protein L14 OS=Caulobacter crescentu... [more]
RL14_CAMFF7.488e-1141.4150S ribosomal protein L14 OS=Campylobacter fetus s... [more]

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Properties
Property NameValue
Genbank descriptionC07010C07SK SaltLeaf1 Citrus clementina cDNA clone C07010C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300441 ID=CX300441; Name=CX300441; organism=Citrus clementina; type=EST; length=390bp
CTTTAGCTGCGAAAATGTCGAAGCGAGGACGTGGAGGATCAGCAGGTAAC
AAGTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTGTGC
TGACAACACTGGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCA
AAGGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATG
GCTACCGTGAAGAAAGGGAAGCCTGATCTTAGGAAGAAGGTGATGCCCGC
CGTCATTGTAAGGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCA
TGTACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAAATG
AAGGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTG
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