CX300441

Overview
NameCX300441
Unique NameCX300441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length390
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_LISMC (50S ribosomal protein L14 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rplN PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.779e-11
Identity = 38/99 (38.38%), Postives = 60/99 (60.61%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADN+GA+ +  I V G  GR     +A +GD+V+ TVK+  P     + +V+ AVIVR +   RR+DG ++ F++NA VI+      +G+ I GP+ +E
Sbjct:   11 ADNSGAREVLTIKVLGGSGR----KTANIGDVVVCTVKQATPGGVVKKGEVVKAVIVRTKSGARRQDGSYIKFDENACVIIRDDKSPRGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_LISIN (50S ribosomal protein L14 OS=Listeria innocua GN=rplN PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.779e-11
Identity = 38/99 (38.38%), Postives = 60/99 (60.61%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADN+GA+ +  I V G  GR     +A +GD+V+ TVK+  P     + +V+ AVIVR +   RR+DG ++ F++NA VI+      +G+ I GP+ +E
Sbjct:   11 ADNSGAREVLTIKVLGGSGR----KTANIGDVVVCTVKQATPGGVVKKGEVVKAVIVRTKSGARRQDGSYIKFDENACVIIRDDKSPRGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_FRAP2 (50S ribosomal protein L14 OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=rplN PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.779e-11
Identity = 42/99 (42.42%), Postives = 57/99 (57.58%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADN+GAK +  I V G   R      A VGD++  TVK+  P  + K   V  AV+VR  K  RRKDG  + F+DNA V++N  G+  G+ I GP+ +E
Sbjct:   11 ADNSGAKRVECIKVLGGSHRRY----ASVGDVIKVTVKEAAPRGKAKKGSVYNAVVVRTAKGVRRKDGSKVRFDDNAAVLLNNNGQPIGTRIFGPVTRE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_CLOPH (50S ribosomal protein L14 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=rplN PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.779e-11
Identity = 41/99 (41.41%), Postives = 58/99 (58.59%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADN+GAK L  I V G  G   R   A +GD+++A+VK   P     +  V+ AV+VR  K  RRKDG ++ F++NA VI+      KG+ I GP+ +E
Sbjct:   11 ADNSGAKELLCIRVMG--GSTRRY--ANIGDIIVASVKDATPGGVVKKGDVVKAVVVRTVKGARRKDGSYIRFDENAAVIIKDDKNPKGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_BACHD (50S ribosomal protein L14 OS=Bacillus halodurans GN=rplN PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.779e-11
Identity = 38/99 (38.38%), Postives = 58/99 (58.59%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADN+GA+ L  I V G  GR     +A +GD+++ +VK+  P     +  V+ AVIVR +   RR DG ++ F++NA VIV      +G+ I GP+ +E
Sbjct:   11 ADNSGARELLCIKVLGGSGR----KTANIGDVIVCSVKQATPGGVVKKGDVVKAVIVRSKSGVRRNDGSYIKFDENAAVIVRDDKSPRGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_OLIPU (50S ribosomal protein L14, chloroplastic OS=Olimarabidopsis pumila GN=rpl14 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.779e-11
Identity = 36/102 (35.29%), Postives = 61/102 (59.80%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G  + ++DNA V+++ +G  KG+ + G I +E
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_NASOF (50S ribosomal protein L14, chloroplastic OS=Nasturtium officinale GN=rpl14 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.779e-11
Identity = 36/102 (35.29%), Postives = 61/102 (59.80%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G  + ++DNA V+++ +G  KG+ + G I +E
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_LOBMA (50S ribosomal protein L14, chloroplastic OS=Lobularia maritima GN=rpl14 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.779e-11
Identity = 36/102 (35.29%), Postives = 61/102 (59.80%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G  + ++DNA V+++ +G  KG+ + G I +E
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_LEPVR (50S ribosomal protein L14, chloroplastic OS=Lepidium virginicum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.779e-11
Identity = 36/102 (35.29%), Postives = 61/102 (59.80%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G  + ++DNA V+++ +G  KG+ + G I +E
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_JASNU (50S ribosomal protein L14, chloroplastic OS=Jasminum nudiflorum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.779e-11
Identity = 36/102 (35.29%), Postives = 61/102 (59.80%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P +   + +V+ AVIVR  K  +R  G+ + ++DNA ++++ KG  KGS + G I +E
Sbjct:    8 LNVADNSGARKLMCIRIIGASNRRY----AHIGDVIVAVIKEAVPHMSLEKSEVVRAVIVRTCKELKRDCGMIIRYDDNAAIVIDQKGNPKGSRVFGAIPEE 105          
The following BLAST results are available for this feature:
BLAST of CX300441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 467
Match NameE-valueIdentityDescription
RL14_LISMC9.779e-1138.3850S ribosomal protein L14 OS=Listeria monocytogene... [more]
RL14_LISIN9.779e-1138.3850S ribosomal protein L14 OS=Listeria innocua GN=r... [more]
RL14_FRAP29.779e-1142.4250S ribosomal protein L14 OS=Francisella philomira... [more]
RL14_CLOPH9.779e-1141.4150S ribosomal protein L14 OS=Clostridium phytoferm... [more]
RL14_BACHD9.779e-1138.3850S ribosomal protein L14 OS=Bacillus halodurans G... [more]
RK14_OLIPU9.779e-1135.2950S ribosomal protein L14, chloroplastic OS=Olimar... [more]
RK14_NASOF9.779e-1135.2950S ribosomal protein L14, chloroplastic OS=Nastur... [more]
RK14_LOBMA9.779e-1135.2950S ribosomal protein L14, chloroplastic OS=Lobula... [more]
RK14_LEPVR9.779e-1135.2950S ribosomal protein L14, chloroplastic OS=Lepidi... [more]
RK14_JASNU9.779e-1135.2950S ribosomal protein L14, chloroplastic OS=Jasmin... [more]

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Properties
Property NameValue
Genbank descriptionC07010C07SK SaltLeaf1 Citrus clementina cDNA clone C07010C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300441 ID=CX300441; Name=CX300441; organism=Citrus clementina; type=EST; length=390bp
CTTTAGCTGCGAAAATGTCGAAGCGAGGACGTGGAGGATCAGCAGGTAAC
AAGTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTGTGC
TGACAACACTGGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCA
AAGGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATG
GCTACCGTGAAGAAAGGGAAGCCTGATCTTAGGAAGAAGGTGATGCCCGC
CGTCATTGTAAGGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCA
TGTACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAAATG
AAGGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTG
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