CX300441

Overview
NameCX300441
Unique NameCX300441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length390
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3742 contig Ccv1_Contig3742:14..403. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_HALSA (50S ribosomal protein L14P OS=Halobacterium salinarium GN=rpl14p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.398e-25
Identity = 56/112 (50.00%), Postives = 77/112 (68.75%), Query Frame = 3
Query:   51 KFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            K  ++ GL   + + CADNTGA+ L I SV G +GR NR P A +GD +  +V KG P++R++V+ AV+VRQRKP RR DG  + FEDNA VI++  GE +G+ I GPI +E
Sbjct:    5 KADITQGLEKGSLITCADNTGARELKITSVMGYQGRKNRHPKAGLGDTITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIIDDLGEPRGTEIKGPISRE 116          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_HALS3 (50S ribosomal protein L14P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.398e-25
Identity = 56/112 (50.00%), Postives = 77/112 (68.75%), Query Frame = 3
Query:   51 KFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            K  ++ GL   + + CADNTGA+ L I SV G +GR NR P A +GD +  +V KG P++R++V+ AV+VRQRKP RR DG  + FEDNA VI++  GE +G+ I GPI +E
Sbjct:    5 KADITQGLEKGSLITCADNTGARELKITSVMGYQGRKNRHPKAGLGDTITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIIDDLGEPRGTEIKGPISRE 116          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_METBU (50S ribosomal protein L14P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.341e-25
Identity = 55/114 (48.25%), Postives = 79/114 (69.30%), Query Frame = 3
Query:   45 GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            G + ++   L   A + C DNTGA+ + IISVK  +G  NR+P   +GDM + +VKKG P++RK+++ AVIVRQ+K +RR DG+ + FEDNA VIV+ KG  KG+ I GP+ +E
Sbjct:    3 GIRSKIPRALNAGAKIECVDNTGARTVEIISVKKYRGVKNRMPKGGIGDMCVVSVKKGTPEMRKQILYAVIVRQKKEFRRPDGIRVAFEDNAVVIVDDKGIPKGTDIKGPVARE 116          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_THEPD (50S ribosomal protein L14P OS=Thermofilum pendens (strain Hrk 5) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.976e-25
Identity = 58/126 (46.03%), Postives = 86/126 (68.25%), Query Frame = 3
Query:   15 MSKRGRGGSAGNKFRMSL--GLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            M+KRG   + G  +R+ L  G+ + + V  ADN+GA    +I V   K    R+P A VGD+V+ +++ GKP+LRK+VM A+++RQR+P+RR DG ++ FEDNA VI+ P+GE KG+ I GP+ KE
Sbjct:    1 MAKRGPK-TVGVSYRLGLTPGVFMESLVKVADNSGATLAKVIGVPHYKAVWRRIPGAAVGDIVIVSIRAGKPELRKQVMRAIVIRQRRPYRRPDGSWIAFEDNAVVIITPEGEPKGTEIRGPLAKE 125          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_SULSO (50S ribosomal protein L14P OS=Sulfolobus solfataricus GN=rpl14p PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.976e-25
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 3
Query:   45 GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            G++  ++  L   + VN ADN+G K   II V G +G L R+P A + DMVM ++KKG P++RK+   AVIVRQR P+RR DG ++ FEDNA VI+NP G  KG+ + GPI +E
Sbjct:    9 GSRKGLTPALQHYSVVNVADNSGGKEAMIIGVYGYRGVLRRVPFANIADMVMVSIKKGTPEVRKQKFRAVIVRQRMPYRRPDGTWISFEDNAVVIINPDGTPKGTEVRGPIARE 122          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_PYRCJ (50S ribosomal protein L14P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.554e-24
Identity = 60/128 (46.88%), Postives = 87/128 (67.97%), Query Frame = 3
Query:   15 MSKRGRGGSAG--NKFRMSLGLPVAATVNCADNTGAKNLYIISVKG--IKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            M+KRG   + G   +F ++ G+ + + V  ADN+GAK + +I V G   K    R+P A VGDMV+  V++GKP+LRK++  A++VRQR+P+RR DG ++ FEDNA VIV P+G+ KGS I GP+  E
Sbjct:    1 MAKRGGKRTVGVPYRFHVTPGIFMNSLVPVADNSGAKLVRVIGVVGHYSKSVHRRIPGAGVGDMVVVVVREGKPELRKQIFRAIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPVAME 128          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_PYRAE (50S ribosomal protein L14P OS=Pyrobaculum aerophilum GN=rpl14p PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.030e-24
Identity = 59/128 (46.09%), Postives = 87/128 (67.97%), Query Frame = 3
Query:   15 MSKRGRGGSAG--NKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRL--NRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            M+KRG   + G   +F ++ G+ + + V  ADN+GAK + +I V G   +    R+P A VGDMV+  V++GKP+LRK++  A++VRQR+P+RR DG ++ FEDNA VIV P+G+ KGS I GP+  E
Sbjct:    1 MAKRGGKRTVGVPYRFHVTPGIFMNSLVPVADNSGAKLVRVIGVVGHYSKTVHRRIPGAGVGDMVVVVVREGKPELRKQIFRAIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPVAME 128          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_SULAC (50S ribosomal protein L14P OS=Sulfolobus acidocaldarius GN=rpl14p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.522e-24
Identity = 53/101 (52.48%), Postives = 72/101 (71.29%), Query Frame = 3
Query:   84 ATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ++V  ADN+GAK   II + G +G L R+P A + D+VM +V+KG PD+RK+   AVIVRQR P+RR DG ++ FEDNA VI+NP G  KG+ + GPI +E
Sbjct:   22 SSVVVADNSGAKEAVIIGIYGYRGVLRRVPFANIADLVMVSVRKGSPDVRKQKFKAVIVRQRMPFRRPDGTWISFEDNAVVIINPDGTPKGTEVRGPIARE 122          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_PYRIL (50S ribosomal protein L14P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.522e-24
Identity = 58/128 (45.31%), Postives = 86/128 (67.19%), Query Frame = 3
Query:   15 MSKRGRGGSAGNKFRMSL--GLPVAATVNCADNTGAKNLYIISVKGIKGRL--NRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            M+KRG   + G  +R  +  G+ + + V  ADN+GA+ + +I V G   +    R+P A VGDMV+  V++GKP+LRK++  A++VRQR+P+RR DG ++ FEDNA VIV P+G+ KGS I GP+  E
Sbjct:    1 MAKRGGKRTVGVSYRFHVTPGIFLNSLVPVADNSGARLVRVIGVVGHYSKTVHRRIPGAGVGDMVVVVVREGKPELRKQIFRAIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPVAME 128          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_CALMQ (50S ribosomal protein L14P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.522e-24
Identity = 57/128 (44.53%), Postives = 88/128 (68.75%), Query Frame = 3
Query:   15 MSKRGRGGSAGNKFRMSL--GLPVAATVNCADNTGAKNLYIISVKG--IKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            M+KRG   + G  +R  L  G+ + + VN ADN+GAK + +I V G   K    R+P   VGDMV+ +V++GKP++RK+++ A++VRQR+P+RR DG ++ FEDNA VIV  +G++KG+ + GP+  E
Sbjct:    1 MAKRGGPRTVGVPWRFHLTPGIFMNSLVNVADNSGAKVVKVIGVVGHYSKNVHRRIPGVSVGDMVVVSVQEGKPEMRKQILRAIVVRQRRPFRRPDGTWVAFEDNAVVIVTEEGQVKGTEVHGPVAME 128          
The following BLAST results are available for this feature:
BLAST of CX300441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 467
Match NameE-valueIdentityDescription
RL14_HALSA2.398e-2550.0050S ribosomal protein L14P OS=Halobacterium salina... [more]
RL14_HALS32.398e-2550.0050S ribosomal protein L14P OS=Halobacterium salina... [more]
RL14_METBU5.341e-2548.2550S ribosomal protein L14P OS=Methanococcoides bur... [more]
RL14_THEPD6.976e-2546.0350S ribosomal protein L14P OS=Thermofilum pendens ... [more]
RL14_SULSO6.976e-2549.1250S ribosomal protein L14P OS=Sulfolobus solfatari... [more]
RL14_PYRCJ1.554e-2446.8850S ribosomal protein L14P OS=Pyrobaculum calidifo... [more]
RL14_PYRAE2.030e-2446.0950S ribosomal protein L14P OS=Pyrobaculum aerophil... [more]
RL14_SULAC4.522e-2452.4850S ribosomal protein L14P OS=Sulfolobus acidocald... [more]
RL14_PYRIL4.522e-2445.3150S ribosomal protein L14P OS=Pyrobaculum islandic... [more]
RL14_CALMQ4.522e-2444.5350S ribosomal protein L14P OS=Caldivirga maquiling... [more]

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Properties
Property NameValue
Genbank descriptionC07010C07SK SaltLeaf1 Citrus clementina cDNA clone C07010C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300441 ID=CX300441; Name=CX300441; organism=Citrus clementina; type=EST; length=390bp
CTTTAGCTGCGAAAATGTCGAAGCGAGGACGTGGAGGATCAGCAGGTAAC
AAGTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTGTGC
TGACAACACTGGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCA
AAGGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATG
GCTACCGTGAAGAAAGGGAAGCCTGATCTTAGGAAGAAGGTGATGCCCGC
CGTCATTGTAAGGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCA
TGTACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAAATG
AAGGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTG
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