CX300441

Overview
NameCX300441
Unique NameCX300441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length390
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_NANEQ (50S ribosomal protein L14P OS=Nanoarchaeum equitans GN=rpl14p PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.583e-21
Identity = 51/106 (48.11%), Postives = 72/106 (67.92%), Query Frame = 3
Query:   72 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNA-GVIVNPKGEMKGSAITGPIGKE 386
            LPV A +N ADN+GAK + +I+VKG KGR  RL  A + D+V+ +V+ GKPD+  ++  AV+VR +K WRR+DG  + FEDNA  ++ +  G  KG+ I  PI KE
Sbjct:   12 LPVGAYLNVADNSGAKVVKLIAVKGYKGRKRRLAKAGIADLVIVSVRDGKPDMIGQIFKAVVVRMKKEWRRRDGTRIKFEDNAVALLKDDYGTPKGTIIKTPIAKE 117          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_METLZ (50S ribosomal protein L14P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.111e-21
Identity = 46/105 (43.81%), Postives = 73/105 (69.52%), Query Frame = 3
Query:   72 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            L   + + CADNTGA+ + I+SV G  G  NR P   +GD+   TVKKG PD+++K++ AV+VRQ+K +RR +G+ + FE+NA +++N  G+ +G+ I GP+ +E
Sbjct:   12 LQTGSKMVCADNTGARVVQIVSVFGYHGVKNRQPKMGLGDLATVTVKKGTPDMKRKLVRAVVVRQKKEFRRPNGLRVSFEENAMILLNENGDPRGTDIKGPVARE 116          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_UNCMA (50S ribosomal protein L14P OS=Uncultured methanogenic archaeon RC-I GN=rpl14p PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.981e-21
Identity = 46/112 (41.07%), Postives = 75/112 (66.96%), Query Frame = 3
Query:   51 KFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            K ++   +  A  +  ADNTGA+ + +ISV   +GR NR+P A +GD+ + +VKKG P++RK ++  V++RQ+K +RR  G+ + FEDNA V+V+   + KG+ I GP+ +E
Sbjct:    5 KAKIPRSVHTATRLEVADNTGARLVEVISVLKYRGRKNRMPKAGIGDIFIGSVKKGTPEMRKTIVRCVVIRQKKEYRRPSGLRVSFEDNACVLVDDNNDPKGTEIKGPVARE 116          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_METHJ (50S ribosomal protein L14P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.966e-19
Identity = 44/99 (44.44%), Postives = 67/99 (67.68%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            + CADNTGA+ + ++SV G  G   R P   + D+   +VKKG PD+R+K++ AV++RQ+K  RR  G+ + FEDNA V+V+ K E +G+ I GP+ +E
Sbjct:   18 LTCADNTGARVVQVVSVFGYHGVRRRQPKLGLADIATVSVKKGTPDMRRKLVRAVVIRQKKEIRRPSGLRLSFEDNAVVVVDDKNEPRGTEIKGPVARE 116          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_METMJ (50S ribosomal protein L14P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.470e-19
Identity = 44/105 (41.90%), Postives = 69/105 (65.71%), Query Frame = 3
Query:   72 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            L   + + C+DNTGA+ + ++SV    G   R P   +GD+   +VKKG PD+R+K+  AV++RQ+K  RR +G+ + FEDNA V++N +GE KG+ I G + +E
Sbjct:   12 LATGSRMVCSDNTGARLVEVVSVDRYHGVRRRQPCLGLGDVATVSVKKGTPDMRRKLEKAVVIRQKKEIRRPNGIRLSFEDNAMVLINERGEPKGTEIKGAVPRE 116          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_DEHE1 (50S ribosomal protein L14 OS=Dehalococcoides ethenogenes (strain 195) GN=rplN PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.992e-17
Identity = 48/102 (47.06%), Postives = 66/102 (64.71%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADNTGAK +  I+V G   +L     A VGD+++A VKK  PD + K   V+ AV+VR  KP+ R DG ++ F+DNA VI+N K E KG+ I GP+ +E
Sbjct:    8 LNVADNTGAKKIMCINVLGGSRKLQ----AKVGDVIVAAVKKSSPDAQAKSGTVVKAVVVRITKPYARPDGSYIKFDDNAAVILNDKMEPKGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_DEHSC (50S ribosomal protein L14 OS=Dehalococcoides sp. (strain CBDB1) GN=rplN PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.193e-16
Identity = 47/102 (46.08%), Postives = 66/102 (64.71%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADNTGAK +  I+V G   ++     A VGD+++A VKK  PD + K   V+ AV+VR  KP+ R DG ++ F+DNA VI+N K E KG+ I GP+ +E
Sbjct:    8 LNVADNTGAKKIMCINVLGGSHKIQ----AKVGDVIVAAVKKSSPDAQAKSGTVVKAVVVRITKPYARPDGSYIKFDDNAAVILNDKMEPKGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_DEHSB (50S ribosomal protein L14 OS=Dehalococcoides sp. (strain BAV1) GN=rplN PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.193e-16
Identity = 47/102 (46.08%), Postives = 66/102 (64.71%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADNTGAK +  I+V G   ++     A VGD+++A VKK  PD + K   V+ AV+VR  KP+ R DG ++ F+DNA VI+N K E KG+ I GP+ +E
Sbjct:    8 LNVADNTGAKKIMCINVLGGSHKIQ----AKVGDVIVAAVKKSSPDAQAKSGTVVKAVVVRITKPYARPDGSYIKFDDNAAVILNDKMEPKGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_THERP (50S ribosomal protein L14 OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=rplN PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.919e-16
Identity = 46/99 (46.46%), Postives = 68/99 (68.69%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGAK +  I V G  G  +R  +  VGD+++A+VKK +P+   K   V+ AVIVR +K +RRKDG ++ F+DNA V+V P+G+ +G+ I GP+ +E
Sbjct:   11 ADNTGAKEIMCIRVLG--GSKHRYGT--VGDLIVASVKKAEPNAAVKKGDVVYAVIVRTKKEYRRKDGSYIKFDDNAAVLVTPQGQPRGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL23_ONCVO (60S ribosomal protein L23 (Fragment) OS=Onchocerca volvulus GN=RPL23 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.722e-15
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 3
Query:   15 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGR 158
            MSKRGRGG++G KFR+SLGLPV A +NCADNTGAKNL++I+V GIKGR
Sbjct:    1 MSKRGRGGTSGAKFRISLGLPVGAVMNCADNTGAKNLFVIAVYGIKGR 48          
The following BLAST results are available for this feature:
BLAST of CX300441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 467
Match NameE-valueIdentityDescription
RL14_NANEQ3.583e-2148.1150S ribosomal protein L14P OS=Nanoarchaeum equitan... [more]
RL14_METLZ6.111e-2143.8150S ribosomal protein L14P OS=Methanocorpusculum l... [more]
RL14_UNCMA7.981e-2141.0750S ribosomal protein L14P OS=Uncultured methanoge... [more]
RL14_METHJ1.966e-1944.4450S ribosomal protein L14P OS=Methanospirillum hun... [more]
RL14_METMJ7.470e-1941.9050S ribosomal protein L14P OS=Methanoculleus maris... [more]
RL14_DEHE16.992e-1747.0650S ribosomal protein L14 OS=Dehalococcoides ethen... [more]
RL14_DEHSC1.193e-1646.0850S ribosomal protein L14 OS=Dehalococcoides sp. (... [more]
RL14_DEHSB1.193e-1646.0850S ribosomal protein L14 OS=Dehalococcoides sp. (... [more]
RL14_THERP5.919e-1646.4650S ribosomal protein L14 OS=Thermomicrobium roseu... [more]
RL23_ONCVO1.722e-1577.0860S ribosomal protein L23 (Fragment) OS=Onchocerca... [more]

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Properties
Property NameValue
Genbank descriptionC07010C07SK SaltLeaf1 Citrus clementina cDNA clone C07010C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300441 ID=CX300441; Name=CX300441; organism=Citrus clementina; type=EST; length=390bp
CTTTAGCTGCGAAAATGTCGAAGCGAGGACGTGGAGGATCAGCAGGTAAC
AAGTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTGTGC
TGACAACACTGGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCA
AAGGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATG
GCTACCGTGAAGAAAGGGAAGCCTGATCTTAGGAAGAAGGTGATGCCCGC
CGTCATTGTAAGGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCA
TGTACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAAATG
AAGGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTG
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