CX300441

Overview
NameCX300441
Unique NameCX300441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length390
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_SACEN (50S ribosomal protein L14 OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=rplN PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.249e-15
Identity = 45/99 (45.45%), Postives = 63/99 (63.64%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADN+GAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVRQ+K  RR DG ++ F++NA V++ P GE +G+ I GP+G+E
Sbjct:   11 ADNSGAKEILTIRVLGGSGRRY----AGIGDIIVATVKDAIPGANVKKGEVVKAVIVRQKKEKRRADGSYIRFDENAAVLIKPSGEPRGTRIFGPVGRE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_CLAMS (50S ribosomal protein L14 OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=rplN PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.458e-14
Identity = 46/99 (46.46%), Postives = 66/99 (66.67%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P  +++K +V+ AVIVR +K  RR DG ++ F++NA VI+N  GE +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGLGDVIVATVKDAIPGGNVKKGEVVKAVIVRTKKETRRPDGSYIKFDENAAVILNSNGEPRGTRIFGPVGRE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_CLAM3 (50S ribosomal protein L14 OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=rplN PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.458e-14
Identity = 46/99 (46.46%), Postives = 66/99 (66.67%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P  +++K +V+ AVIVR +K  RR DG ++ F++NA VI+N  GE +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGLGDVIVATVKDAIPGGNVKKGEVVKAVIVRTKKETRRPDGSYIKFDENAAVILNSNGEPRGTRIFGPVGRE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_STIHE (50S ribosomal protein L14, chloroplastic OS=Stigeoclonium helveticum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.487e-14
Identity = 43/103 (41.75%), Postives = 68/103 (66.02%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKG-IKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADNTGA+ +  I V G I+G+     +A +GD+++A VK   P+   K   ++ AV+VR RK  RR++G+F+ FEDNA V++N +G  +G+ I GP+ +E
Sbjct:    8 LNVADNTGARKVMCIRVLGGIQGQ-----TANIGDVIIAVVKDALPNTGVKKSDIVRAVVVRTRKGIRRENGMFIRFEDNAAVVINKEGNPRGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_DESVM (50S ribosomal protein L14 OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=rplN PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.540e-14
Identity = 47/108 (43.52%), Postives = 66/108 (61.11%), Query Frame = 3
Query:   72 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            + V +T+  ADN+GAK +  I V G  G   R   A VGD+V+ +VK+  P  + K   VM AVIVR RK  RR DG ++ F+ NA V++N +GE  G+ I GP+ +E
Sbjct:    2 IQVESTLQVADNSGAKKVACIKVLG--GSKRRY--ATVGDIVVVSVKEALPHCKVKKGDVMQAVIVRTRKEVRRVDGSYIKFDSNAAVLLNKQGEPVGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_CYAP4 (50S ribosomal protein L14 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplN PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.540e-14
Identity = 46/102 (45.10%), Postives = 64/102 (62.75%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADN+GAK L  I V G  G   R  S  VGD+++ATVK   P++  K   V+ AVIVR RK  RR+ G+ + F+DNA V++N  G  KG+ + GP+ +E
Sbjct:    8 LNVADNSGAKKLLCIRVLG--GGNRRYGS--VGDVIIATVKDATPNMPVKKSDVVRAVIVRTRKAIRRESGMSIRFDDNAAVLINQDGNPKGTRVFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_CHLT3 (50S ribosomal protein L14 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=rplN PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.540e-14
Identity = 42/99 (42.42%), Postives = 63/99 (63.64%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADN+GAK +  I V G  GR      A +GDM++ +VK   P     +K V  AV+VR +K +RRKDG ++ F++NA V++N +GE +G+ I GP+ +E
Sbjct:   11 ADNSGAKRVRCIHVLGGTGRRY----ATIGDMIVVSVKSAIPGGAVKKKDVSKAVVVRTKKEYRRKDGSYIRFDENAVVLLNTQGEPRGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_THEEB (50S ribosomal protein L14 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplN PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.236e-14
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADN+GAK L  I V G  G   R  S  VGD+++ATVK   P++  K   V+ AVIVR RK  RR+ G+ + F+DNA V++N  G  +G+ + GP+ +E
Sbjct:    8 LNVADNSGAKKLLCIRVLG--GSNRRYGS--VGDVIIATVKDATPNMAVKKSDVVRAVIVRTRKSIRRESGMSIRFDDNAAVLINQDGNPRGTRVFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_ZYGCR (50S ribosomal protein L14, chloroplastic OS=Zygnema circumcarinatum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.236e-14
Identity = 40/102 (39.22%), Postives = 65/102 (63.73%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADN+GA+ L  I V G   R      A +GDMV+A VK+  P++   + +++ AVIVR RK  +R +G+ + F+DNA V++N +G  +G+ + GP+ +E
Sbjct:    8 LNVADNSGARKLMCIRVLGSSNR----KYAHIGDMVIAVVKETVPNMPLKKSEIVRAVIVRTRKGLKRDNGMVLRFDDNAAVVINQEGNPRGTRVFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_PHYPA (50S ribosomal protein L14, chloroplastic OS=Physcomitrella patens GN=rpl14 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.236e-14
Identity = 39/102 (38.24%), Postives = 64/102 (62.75%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADN+GA+ L  I + G   R      A +GD+++A VK+  P++   + +V+ AV+VR  K  +RK+G  + F+DNA VI+N +G  KG+ + GP+ +E
Sbjct:    8 LNVADNSGARKLMCIQILGASNR----KYAHIGDIIIAVVKEAIPNMPLKKSEVVRAVVVRTCKELKRKNGTIIQFDDNAAVIINQEGNPKGTRVFGPVARE 105          
The following BLAST results are available for this feature:
BLAST of CX300441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 467
Match NameE-valueIdentityDescription
RL14_SACEN2.249e-1545.4550S ribosomal protein L14 OS=Saccharopolyspora ery... [more]
RL14_CLAMS1.458e-1446.4650S ribosomal protein L14 OS=Clavibacter michigane... [more]
RL14_CLAM31.458e-1446.4650S ribosomal protein L14 OS=Clavibacter michigane... [more]
RK14_STIHE2.487e-1441.7550S ribosomal protein L14, chloroplastic OS=Stigeo... [more]
RL14_DESVM5.540e-1443.5250S ribosomal protein L14 OS=Desulfovibrio vulgari... [more]
RL14_CYAP45.540e-1445.1050S ribosomal protein L14 OS=Cyanothece sp. (strai... [more]
RL14_CHLT35.540e-1442.4250S ribosomal protein L14 OS=Chloroherpeton thalas... [more]
RL14_THEEB7.236e-1444.1250S ribosomal protein L14 OS=Thermosynechococcus e... [more]
RK14_ZYGCR7.236e-1439.2250S ribosomal protein L14, chloroplastic OS=Zygnem... [more]
RK14_PHYPA7.236e-1438.2450S ribosomal protein L14, chloroplastic OS=Physco... [more]

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Properties
Property NameValue
Genbank descriptionC07010C07SK SaltLeaf1 Citrus clementina cDNA clone C07010C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300441 ID=CX300441; Name=CX300441; organism=Citrus clementina; type=EST; length=390bp
CTTTAGCTGCGAAAATGTCGAAGCGAGGACGTGGAGGATCAGCAGGTAAC
AAGTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTGTGC
TGACAACACTGGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCA
AAGGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATG
GCTACCGTGAAGAAAGGGAAGCCTGATCTTAGGAAGAAGGTGATGCCCGC
CGTCATTGTAAGGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCA
TGTACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAAATG
AAGGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTG
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