CX300441

Overview
NameCX300441
Unique NameCX300441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length390
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_MICLU (50S ribosomal protein L14 OS=Micrococcus luteus GN=rplN PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.450e-14
Identity = 45/99 (45.45%), Postives = 60/99 (60.61%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGAK +  I V G  GR      A +GD ++ATVK   P    K   V+ AV+VR RK  RR DG ++ F++NA VI+   GE +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDTIVATVKDAIPGGNVKKAHVVKAVVVRTRKQSRRPDGSYIKFDENAAVILKTDGEPRGTRIFGPVGRE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_MICLC (50S ribosomal protein L14 OS=Micrococcus luteus (strain ATCC 4698 / IFO 3333 / NCTC 2665) GN=rplN PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.450e-14
Identity = 45/99 (45.45%), Postives = 60/99 (60.61%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGAK +  I V G  GR      A +GD ++ATVK   P    K   V+ AV+VR RK  RR DG ++ F++NA VI+   GE +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDTIVATVKDAIPGGNVKKGDVVKAVVVRTRKQSRRPDGSYIKFDENAAVILKTDGEPRGTRIFGPVGRE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_FUSNN (50S ribosomal protein L14 OS=Fusobacterium nucleatum subsp. nucleatum GN=rplN PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.450e-14
Identity = 44/102 (43.14%), Postives = 63/102 (61.76%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADN+GAK L +I V G  G   R     +GD+V+A+VK+  P    K   ++ AVIVR RK  RR DG ++ F+DNAGV++N   E + + I GP+ +E
Sbjct:    8 LNVADNSGAKKLMVIRVLG--GSRKRFGK--IGDIVVASVKEAIPGGNVKKGDIVKAVIVRTRKETRRDDGSYIKFDDNAGVVINNNNEPRATRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_DESVV (50S ribosomal protein L14 OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=rplN PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.450e-14
Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = 3
Query:   72 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            + V +T+  ADN+GAK +  I V G   R      A VGD++M +VK+  P  + K   VM AVIVR  K  RR DG ++ F+ NA V++N +GE  G+ I GP+ +E
Sbjct:    2 IQVESTLQVADNSGAKKVACIKVLGGSHRRY----ATVGDIIMVSVKEAMPHCKVKKGDVMQAVIVRTAKEVRRADGSYIKFDSNAAVLLNKQGEPVGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_DESVH (50S ribosomal protein L14 OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=rplN PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.450e-14
Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = 3
Query:   72 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            + V +T+  ADN+GAK +  I V G   R      A VGD++M +VK+  P  + K   VM AVIVR  K  RR DG ++ F+ NA V++N +GE  G+ I GP+ +E
Sbjct:    2 IQVESTLQVADNSGAKKVACIKVLGGSHRRY----ATVGDIIMVSVKEAMPHCKVKKGDVMQAVIVRTAKEVRRADGSYIKFDSNAAVLLNKQGEPVGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_LEIXX (50S ribosomal protein L14 OS=Leifsonia xyli subsp. xyli GN=rplN PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.234e-13
Identity = 46/99 (46.46%), Postives = 61/99 (61.62%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGAK L  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR RK  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E
Sbjct:   11 ADNTGAKELLTIRVLGGSGRRY----AGLGDVIVATVKDAIPGGNVKKGDVVKAVIVRTRKNTRRTDGSYIKFDENAAVILKNDGDPRGTRIFGPVGRE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_ACAM1 (50S ribosomal protein L14 OS=Acaryochloris marina (strain MBIC 11017) GN=rplN PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.234e-13
Identity = 44/103 (42.72%), Postives = 63/103 (61.17%), Query Frame = 3
Query:   87 TVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            T+N ADN+GAK L  I V G   R        VGD+++ATVK   P++  K   V+ AVIVR RK   R+ G+ + F+DNA V++NP G  +G+ + GP+ +E
Sbjct:    7 TLNVADNSGAKRLLCIRVIGGGNRRY----GGVGDVIIATVKDATPNMPVKKSDVVRAVIVRTRKSICRESGMSIRFDDNAAVLINPDGNPRGTRVFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RK14_ADICA (50S ribosomal protein L14, chloroplastic OS=Adiantum capillus-veneris GN=rpl14 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.234e-13
Identity = 39/108 (36.11%), Postives = 69/108 (63.89%), Query Frame = 3
Query:   72 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            + + + ++ ADN+GA+ L  I V G   R      A +GD+++A VK+  P++   R +V+ AV+VR R+  +R++G+ + F+DNA VI+N +G  +G+ I GP+ +E
Sbjct:    2 IQIQSYLDVADNSGARKLMCIRVLGTGNR----KYADIGDIIIAVVKEAVPNMFLKRSEVVRAVVVRTRRGLKRRNGMVLEFDDNAAVIINQEGNPRGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_SYNFM (50S ribosomal protein L14 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rplN PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.612e-13
Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = 3
Query:   90 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            +N ADN+GAK LY I V G  G   R  S  VGD+++ +VK+  P+ + K   V+ AV+VR +K  RR DG ++ F+DN+ V++N   E  G+ I GP+ +E
Sbjct:    8 LNAADNSGAKRLYCIKVLG--GTRKRYAS--VGDIIVVSVKEAIPNAKVKKGDVLKAVVVRTQKEVRRPDGSYIKFDDNSAVLINQAKEPIGTRIFGPVARE 105          
BLAST of CX300441 vs. ExPASy Swiss-Prot
Match: RL14_HERA2 (50S ribosomal protein L14 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=rplN PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.612e-13
Identity = 46/99 (46.46%), Postives = 60/99 (60.61%), Query Frame = 3
Query:   99 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 386
            ADNTGAK L  I V G  G   R  S  VGD ++ATVK+  P    K   V+ AVIVR +K + R DG  + F+DNA VI+N +G  +G+ I GP+ +E
Sbjct:   11 ADNTGAKELLCIRVLG--GTKRRYAS--VGDTIIATVKQANPGGSAKKGEVVRAVIVRVKKGYTRPDGSMIQFDDNAAVIINQQGNPRGTRIFGPVARE 105          
The following BLAST results are available for this feature:
BLAST of CX300441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 467
Match NameE-valueIdentityDescription
RL14_MICLU9.450e-1445.4550S ribosomal protein L14 OS=Micrococcus luteus GN... [more]
RL14_MICLC9.450e-1445.4550S ribosomal protein L14 OS=Micrococcus luteus (s... [more]
RL14_FUSNN9.450e-1443.1450S ribosomal protein L14 OS=Fusobacterium nucleat... [more]
RL14_DESVV9.450e-1441.6750S ribosomal protein L14 OS=Desulfovibrio vulgari... [more]
RL14_DESVH9.450e-1441.6750S ribosomal protein L14 OS=Desulfovibrio vulgari... [more]
RL14_LEIXX1.234e-1346.4650S ribosomal protein L14 OS=Leifsonia xyli subsp.... [more]
RL14_ACAM11.234e-1342.7250S ribosomal protein L14 OS=Acaryochloris marina ... [more]
RK14_ADICA1.234e-1336.1150S ribosomal protein L14, chloroplastic OS=Adiant... [more]
RL14_SYNFM1.612e-1342.1650S ribosomal protein L14 OS=Syntrophobacter fumar... [more]
RL14_HERA21.612e-1346.4650S ribosomal protein L14 OS=Herpetosiphon auranti... [more]

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Properties
Property NameValue
Genbank descriptionC07010C07SK SaltLeaf1 Citrus clementina cDNA clone C07010C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300441 ID=CX300441; Name=CX300441; organism=Citrus clementina; type=EST; length=390bp
CTTTAGCTGCGAAAATGTCGAAGCGAGGACGTGGAGGATCAGCAGGTAAC
AAGTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTGTGC
TGACAACACTGGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCA
AAGGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATG
GCTACCGTGAAGAAAGGGAAGCCTGATCTTAGGAAGAAGGTGATGCCCGC
CGTCATTGTAAGGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCA
TGTACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAAATG
AAGGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTG
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