CX300444

Overview
NameCX300444
Unique NameCX300444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:489..936. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 1.829e-40
Identity = 79/136 (58.09%), Postives = 90/136 (66.18%), Query Frame = 3
Query:    6 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGW-NDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 410
            +Y GRGPIQL+WNYNY  C                  TDPV+SFK+AIWFWM  Q PKPSCH VIT  W PSA D+ AGR+PGYG+ TNIINGGIECGQG  N A  +RIGF+  +C   G   G NLDCY Q+PF
Sbjct:  196 QYCGRGPIQLSWNYNYGLCGDDLKLPLLQEPELVE--TDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGTTYGSNLDCYQQRPF 329          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.389e-40
Identity = 75/135 (55.56%), Postives = 93/135 (68.89%), Query Frame = 3
Query:    6 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 410
            KY+GRGPIQ++ NYNY  C                 ATDPV+SFKSAIWFWMT Q PKPSCH+VIT  W+PS  D  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PG NLDC +Q+ F
Sbjct:  181 KYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLV--ATDPVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGENLDCGNQRSF 313          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 3.120e-40
Identity = 78/144 (54.17%), Postives = 97/144 (67.36%), Query Frame = 3
Query:    6 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFCPILMARSM 437
            KYYGRGPIQ+++NYNY  C                 AT+ V+SFKSAIWFWMTAQ PKPSCH+VIT  W PSA D  A RLPGYG+ TNIINGG+ECG G +  V++RIGF+  +C   G+ PG N+DC +Q+ F   L+  +M
Sbjct:  193 KYYGRGPIQISYNYNYGPCGRAIGQNLLNNPDLV--ATNAVVSFKSAIWFWMTAQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGVSPGDNIDCGNQKSFNSGLLLETM 334          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 3.120e-40
Identity = 75/137 (54.74%), Postives = 92/137 (67.15%), Query Frame = 3
Query:    6 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFCP 416
            KYYGRGPIQ+T+NYNY                    A+D  +SFK+A WFWMT Q PKPSCH VIT +W PSA+D  AGR+PGYG  TNIINGG+ECG G +D V +RIGF+  +C   G+  G NLDCY+Q+P+ P
Sbjct:  185 KYYGRGPIQITYNYNY--GPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDCYNQRPYPP 319          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 6.950e-40
Identity = 76/144 (52.78%), Postives = 97/144 (67.36%), Query Frame = 3
Query:    6 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFCPILMARSM 437
            KY+GRGPIQ++ NYNY  C                 ATDPV+SFKSA+WFWMT Q PKPSCH+VI   W+PSA D  A RLPG+G+ TNIINGG+ECG+G +  V++RIGF+  +C   G+ PG NLDC +Q+ F   L+  +M
Sbjct:  188 KYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLV--ATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 329          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.022e-39
Identity = 73/135 (54.07%), Postives = 92/135 (68.15%), Query Frame = 3
Query:    6 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 410
            KY+GRGPIQ++ NYNY  C                 ATD ++SFKSAIWFWMT Q PKPSCH+VIT  W+PS  D  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PG NLDC +Q+ F
Sbjct:  175 KYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLV--ATDSIISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSF 307          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.641e-39
Identity = 74/135 (54.81%), Postives = 92/135 (68.15%), Query Frame = 3
Query:    6 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 410
            KY+GRGPIQ++ NYNY  C                 ATD V+SFKSAIWFWMT Q PKPSCH+VIT  W+PS  D  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PG NLDC +Q+ F
Sbjct:  177 KYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLV--ATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSF 309          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.641e-39
Identity = 75/144 (52.08%), Postives = 97/144 (67.36%), Query Frame = 3
Query:    6 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFCPILMARSM 437
            KY+GRGPIQ++ NYNY  C                 ATDPV+SFKSA+WFWMT Q PKPSCH+VI   W+PS+ D  A RLPG+G+ TNIINGG+ECG+G +  V++RIGF+  +C   G+ PG NLDC +Q+ F   L+  +M
Sbjct:  183 KYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLV--ATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSSADRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 324          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.641e-39
Identity = 76/144 (52.78%), Postives = 96/144 (66.67%), Query Frame = 3
Query:    6 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFCPILMARSM 437
            KY+GRGPIQ++ NYNY  C                 ATD V+SFKSAIWFWMT Q PKPSCH+VIT  W+PS  D  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PG NLDC +Q+ F   L+  +M
Sbjct:  177 KYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLV--ATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTM 318          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 3.449e-39
Identity = 75/135 (55.56%), Postives = 90/135 (66.67%), Query Frame = 3
Query:    6 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 410
            KYYGRGPIQL++N+NY                    ATD  +SFK+A+WFWMT Q  KPS H+VIT  W PS  D  AGR PGYG+ TNI+NGG+ECG G +D V NRIGF+  +CG FGI  G NLDCY+Q+PF
Sbjct:  197 KYYGRGPIQLSFNFNY--GPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQRPF 329          
The following BLAST results are available for this feature:
BLAST of CX300444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI6_POPTR1.829e-4058.09Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHIC_SOLLC2.389e-4055.56Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI3_TOBAC3.120e-4054.17Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI3_ORYSJ3.120e-4054.74Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_TOBAC6.950e-4052.78Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI2_SOLTU2.022e-3954.07Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_SOLTU2.641e-3954.81Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_TOBAC2.641e-3952.08Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_SOLTU2.641e-3952.78Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_ORYSJ3.449e-3955.56Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionC07010C10SK SaltLeaf1 Citrus clementina cDNA clone C07010C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300444 ID=CX300444; Name=CX300444; organism=Citrus clementina; type=EST; length=448bp
GAGGGAAGTACTATGGCCGAGGTCCAATTCAACTCACTTGGAATTACAAT
TACTTACGGTGCGGAGAAGACCTAGGGCTAGGAGAGGAGTTGTTGAACAA
TCCAGACCTTCTTGCTACTGATCCAGTACTATCATTCAAGTCAGCAATCT
GGTTCTGGATGACCGCACAGCCACCAAAGCCATCATGCCACGAAGTCATT
ACCGACGAATGGAAACCATCAGCAAATGACGTAAACGCCGGCCGGCTTCC
GGGATACGGTCTAACCACAAATATAATCAACGGTGGAATTGAATGTGGCC
AAGGTTGGAATGACGCTGTACGTAACCGTATTGGGTTCTTTAGCACTTTC
TGTGGCAAGTTTGGGATTCAGCCTGGTTACAATCTTGATTGCTACCACCA
ACAGCCTTTTTGCCCTATTCTGATGGCACGATCTATGTGATCATCATG
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