CX300444

Overview
NameCX300444
Unique NameCX300444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 4.505e-39
Identity = 71/135 (52.59%), Postives = 90/135 (66.67%), Query Frame = 3
Query:    6 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 410
            KYYGRGPIQ+++NYNY                    A+D  +SFK+A WFWMT Q PKPSCH V+T +W P+ ND  AGR+PGYG+ TNIINGG+ECG G +  V +RIGF+  +C   G+  G NLDCY+Q+PF
Sbjct:  189 KYYGRGPIQISYNYNY--GPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDMLGVSYGANLDCYNQRPF 321          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.004e-38
Identity = 73/144 (50.69%), Postives = 97/144 (67.36%), Query Frame = 3
Query:    6 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFCPILMARSM 437
            KY+GRGPIQ++ NYNY  C                 ATDPV+SFK+A+WFWMT Q PKPSCH+VI   W PS+ D  A RLPG+G+ TNIINGG+ECG+G ++ V++RIGF+  +C   G+ PG NLDC +Q+ F   L+  ++
Sbjct:  187 KYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLV--ATDPVISFKTALWFWMTPQSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGVTPGDNLDCVNQRWFGNALLVDTL 328          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.814e-38
Identity = 74/135 (54.81%), Postives = 91/135 (67.41%), Query Frame = 3
Query:    6 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 410
            KYYGRGPIQLT NYNY                    +T+P +SFK+AIWFWMT Q  KPS H+VIT  W PSA D +AGR+PGYG+ TNIINGGIECG G ++ V +R+GF+  +C  FG+ PG NLDC +Q+ F
Sbjct:  187 KYYGRGPIQLTHNYNY--GLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGVDPGGNLDCNNQRSF 319          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 156.377 bits (394), Expect = 4.981e-38
Identity = 73/134 (54.48%), Postives = 88/134 (65.67%), Query Frame = 3
Query:    9 YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 410
            YYGRGPIQL+ NYNY                    ATDP +SFK+A+WFWMTAQ PKPS H VIT +W PS  D  AGR+PG+G+ TNI+NGGIECG G +  V +RIGF+  +C   G+  G NLDCY Q+PF
Sbjct:  186 YYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 317          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 8.496e-38
Identity = 73/135 (54.07%), Postives = 89/135 (65.93%), Query Frame = 3
Query:    6 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 410
            +YYGRGPIQL+ NYNY                    ATDP +SFK+A+WFWMTAQ PKPS H VIT +W PS  D  AGR PG+G+ TNIINGG+ECG G +  V +RIGF+  +C   G+  G NLDCY+Q+PF
Sbjct:  133 RYYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDCYNQRPF 265          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.449e-37
Identity = 71/135 (52.59%), Postives = 86/135 (63.70%), Query Frame = 3
Query:    6 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 410
            +YYGRGPIQLT   NY R                  ATDP++SF++AIWFWMTAQ  KPSCH VI  +W PS  D  A R+PGYG+ TNIINGG+EC  G N AV +RIGF+  +CG   +  G NLDC +Q+ F
Sbjct:  116 RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.893e-37
Identity = 73/135 (54.07%), Postives = 87/135 (64.44%), Query Frame = 3
Query:    6 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 410
            +YYGRGPIQL+ NYNY                    ATD  + FK+AIWFWMTAQPPKPS H VI  +W PS  D  AGR+PG+G+ TNIINGGIECG G +  V +RIGF+  +C   G+  G NLDCY Q+PF
Sbjct:  133 RYYGRGPIQLSHNYNY--GPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 265          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.472e-37
Identity = 72/135 (53.33%), Postives = 90/135 (66.67%), Query Frame = 3
Query:    6 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 410
            KYYGRGPIQ+++NYNY +                  ATD V+SFK+A WFWMT Q PKPSCH VIT  W PS  D +AGRLPG+G+ TNIINGG+ECG+G    V++RIGF+  +C    +  G NLDC +Q+PF
Sbjct:  173 KYYGRGPIQISYNYNYGQAGKAIGVDLVNNPDLV--ATDAVISFKTAFWFWMTPQSPKPSCHNVITGGWTPSGADRSAGRLPGFGVITNIINGGVECGKGVVPQVQDRIGFYKRYCDILRVSYGNNLDCNNQRPF 305          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.472e-37
Identity = 72/134 (53.73%), Postives = 88/134 (65.67%), Query Frame = 3
Query:    9 YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 410
            YYGRGPIQL+ NYNY                    ATDP +SFK+A+WFWMTAQ PKPS H VIT +W PS  D  AGR+PG+G+ TNI+NGGIECG G +  V +RIGF+  +C    +  G NLDCY+Q+PF
Sbjct:  189 YYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILRVGYGNNLDCYNQRPF 320          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 2.472e-37
Identity = 71/135 (52.59%), Postives = 88/135 (65.19%), Query Frame = 3
Query:    6 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 410
            KYYGRGPIQL++N+NY                    A+D  +SF +A WFWMT Q PKPSCH V T +W PSA+D  AGR+PGYG+ TNIINGG+ECG G +D V +RIGF+  +C   G+    NLDCY Q+PF
Sbjct:  192 KYYGRGPIQLSYNFNY--GPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSYDANLDCYSQRPF 324          
The following BLAST results are available for this feature:
BLAST of CX300444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI1_ORYSJ4.505e-3952.59Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_SOLTU1.004e-3850.69Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHIX_PEA3.814e-3854.81Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI1_HORVU4.981e-3854.4826 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIC_SECCE8.496e-3854.07Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHIA_SOLCI1.449e-3752.59Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHI2_HORVU1.893e-3754.0726 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHIB_VITVI2.472e-3753.33Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHIA_SECCE2.472e-3753.73Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI12_ORYSJ2.472e-3752.59Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]

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Properties
Property NameValue
Genbank descriptionC07010C10SK SaltLeaf1 Citrus clementina cDNA clone C07010C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300444 ID=CX300444; Name=CX300444; organism=Citrus clementina; type=EST; length=448bp
GAGGGAAGTACTATGGCCGAGGTCCAATTCAACTCACTTGGAATTACAAT
TACTTACGGTGCGGAGAAGACCTAGGGCTAGGAGAGGAGTTGTTGAACAA
TCCAGACCTTCTTGCTACTGATCCAGTACTATCATTCAAGTCAGCAATCT
GGTTCTGGATGACCGCACAGCCACCAAAGCCATCATGCCACGAAGTCATT
ACCGACGAATGGAAACCATCAGCAAATGACGTAAACGCCGGCCGGCTTCC
GGGATACGGTCTAACCACAAATATAATCAACGGTGGAATTGAATGTGGCC
AAGGTTGGAATGACGCTGTACGTAACCGTATTGGGTTCTTTAGCACTTTC
TGTGGCAAGTTTGGGATTCAGCCTGGTTACAATCTTGATTGCTACCACCA
ACAGCCTTTTTGCCCTATTCTGATGGCACGATCTATGTGATCATCATG
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