CX300444

Overview
NameCX300444
Unique NameCX300444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:489..936. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 6.966e-32
Identity = 60/134 (44.78%), Postives = 83/134 (61.94%), Query Frame = 3
Query:    9 YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 410
            Y+GRGPIQ++WN+NY                     +D  ++F++A+WFWMT +  KPSCH+V+  E++P   DV A R  G+GL TNI+NGG+EC +  +  V NRIGF+  +C   G+  G NLDC HQQPF
Sbjct:  159 YHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSD--IAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGVDVGPNLDCEHQQPF 290          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.897e-31
Identity = 64/135 (47.41%), Postives = 79/135 (58.52%), Query Frame = 3
Query:    9 YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP-KPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 410
            YYGRGP+QL WNYNY  C                 ATDPVLSF++A+WFWM       PSCHEVIT EW PS  D+ AGR PG+G+ TNII  G EC +      +NRI ++  +C    + PG NL C +Q+ F
Sbjct:  172 YYGRGPLQLRWNYNYGECGNYLGQNLLDEPEKV--ATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYCDNQETF 304          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.716e-30
Identity = 62/134 (46.27%), Postives = 82/134 (61.19%), Query Frame = 3
Query:    9 YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 410
            Y+GRGPIQ+++NYNY                     +D  + FK+A+WFWMT Q PKPS H+VIT  W PS+ D  AGR+PGYG+ TNII+GG+ECG+G    V +RIG++             NLDCY+Q+PF
Sbjct:   79 YFGRGPIQISYNYNYGAAGKAIGVDLLRNPDLV--TSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYKD-----------NLDCYNQKPF 199          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.578e-28
Identity = 61/143 (42.66%), Postives = 85/143 (59.44%), Query Frame = 3
Query:    9 YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP-KPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFCPILMARS 434
            Y+ RGP+Q+ +NYNY                    ATDP ++FK+A+W WMTA+ P +PS H V+T +W P+  D  AGR PGYGLTTNI+ GG++C  G   A  +R+ F+  +C   G+  G NLDC+ Q PF   +M+ S
Sbjct:  199 YHARGPMQIAYNYNYGAAGEAIGADLLGNPELV--ATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGDIMSAS 337          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.673e-28
Identity = 61/143 (42.66%), Postives = 85/143 (59.44%), Query Frame = 3
Query:    9 YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP-KPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFCPILMARS 434
            Y+ RGP+Q+ +NYNY                    ATDP ++FK+A+W WMTA+ P +PS H V+T +W P+  D  AGR PGYGLTTNI+ GG++C  G   A  +R+ F+  +C   G+  G NLDC+ Q PF   +M+ S
Sbjct:  199 YHARGPMQIAYNYNYGAAGEAIGADLLGNPELV--ATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGGIMSAS 337          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.725e-18
Identity = 49/129 (37.98%), Postives = 61/129 (47.29%), Query Frame = 3
Query:    6 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDC 392
            KYYGRGP+QL+WNYNY                    ATD   SFK+A+WFWMT      + H V+                 G+G TT  ING +EC     D   +RI F+  +C  FG+ PG NL C
Sbjct:  183 KYYGRGPLQLSWNYNY--ALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT------NVHSVMNQ---------------GFGATTKAINGALECNGQNQDQANDRIQFYKKYCADFGVAPGDNLTC 288          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.666e-17
Identity = 46/129 (35.66%), Postives = 62/129 (48.06%), Query Frame = 3
Query:    6 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDC 392
            KYYGRGP+Q++WNYNY                    A DP +SFK+A+WFWM                     N+V+   L G+G T   ING +EC      AV  R+ ++  +C +FG+ PG NL C
Sbjct:  183 KYYGRGPLQISWNYNY--GPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWM---------------------NNVHQVMLQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVDPGGNLYC 288          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.842e-16
Identity = 44/129 (34.11%), Postives = 63/129 (48.84%), Query Frame = 3
Query:    6 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDC 392
            KYYGRGP+Q++WN+NY                    A DP +SFK+A+WFWM       + H+V++                G+G T   ING +EC      AV  R+ ++  +C +FG+ PG NL C
Sbjct:  180 KYYGRGPLQISWNFNY--GPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWMN------NVHQVMSQ---------------GFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.559e-15
Identity = 45/130 (34.62%), Postives = 66/130 (50.77%), Query Frame = 3
Query:    6 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDA-VRNRIGFFSTFCGKFGIQPGYNLDC 392
            +Y+GRGP+QL+WNYNY+                     DP++SFK+++WFW+     +     VI D  +            G+G T  IINGG EC  G N A +  R+G++  +C + G+ PG NL C
Sbjct:  141 EYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIV--GRDPIISFKTSLWFWI-----RKGVQYVILDPNQ------------GFGATIRIINGGQEC-DGHNTAQMMARVGYYQEYCAQLGVSPGNNLPC 250          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.925e-15
Identity = 43/128 (33.59%), Postives = 63/128 (49.22%), Query Frame = 3
Query:    9 YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDC 392
            Y+GRGPIQL+WNYNY  C                 +++P ++F++ +WFWM +               +P  N        G+G T   ING +EC  G + AV  RI ++  +CG+ G+ PG NL C
Sbjct:  165 YFGRGPIQLSWNYNYGACGQSLNLNLLGQPELV--SSNPTVAFRTGLWFWMNSV--------------RPVLNQ-------GFGATIRAING-MECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268          
The following BLAST results are available for this feature:
BLAST of CX300444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI10_ORYSJ6.966e-3244.78Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI8_POPTR5.897e-3147.41Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIT_AVESA1.716e-3046.27Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHI7_ORYSJ3.578e-2842.66Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI4.673e-2842.66Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIP_BETVU5.725e-1837.98Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHI5_ORYSJ1.666e-1735.66Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ1.842e-1634.11Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_DIOJA1.559e-1534.62Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI4_BRANA5.925e-1533.59Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionC07010C10SK SaltLeaf1 Citrus clementina cDNA clone C07010C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300444 ID=CX300444; Name=CX300444; organism=Citrus clementina; type=EST; length=448bp
GAGGGAAGTACTATGGCCGAGGTCCAATTCAACTCACTTGGAATTACAAT
TACTTACGGTGCGGAGAAGACCTAGGGCTAGGAGAGGAGTTGTTGAACAA
TCCAGACCTTCTTGCTACTGATCCAGTACTATCATTCAAGTCAGCAATCT
GGTTCTGGATGACCGCACAGCCACCAAAGCCATCATGCCACGAAGTCATT
ACCGACGAATGGAAACCATCAGCAAATGACGTAAACGCCGGCCGGCTTCC
GGGATACGGTCTAACCACAAATATAATCAACGGTGGAATTGAATGTGGCC
AAGGTTGGAATGACGCTGTACGTAACCGTATTGGGTTCTTTAGCACTTTC
TGTGGCAAGTTTGGGATTCAGCCTGGTTACAATCTTGATTGCTACCACCA
ACAGCCTTTTTGCCCTATTCTGATGGCACGATCTATGTGATCATCATG
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