CX300444

Overview
NameCX300444
Unique NameCX300444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:489..936. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 7.738e-15
Identity = 46/130 (35.38%), Postives = 63/130 (48.46%), Query Frame = 3
Query:    6 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRN-RIGFFSTFCGKFGIQPGYNLDC 392
            KYYGRGP+Q++WNYNY                    A D V++FK+A+WFWM       S H V+                 G+G TT  +   +ECG G N A  N R+G++  +C + G+ PG NL C
Sbjct:  164 KYYGRGPLQISWNYNY--GPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMN------SVHGVVPQ---------------GFGATTRAMQRALECG-GNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.320e-14
Identity = 41/128 (32.03%), Postives = 59/128 (46.09%), Query Frame = 3
Query:    9 YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDC 392
            YYGRGP+Q++WN+NY                    A  PVL+F++A+W+W        + H+                   G+G T   ING +EC      AV NR+ ++  FC +FG+ PG NL C
Sbjct:  165 YYGRGPLQISWNFNY--GPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTN------NVHDAFVSG-------------QGFGATIRAINGALECDGKNPTAVSNRVAYYQQFCQQFGVDPGSNLTC 271          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.724e-14
Identity = 45/130 (34.62%), Postives = 62/130 (47.69%), Query Frame = 3
Query:    6 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRN-RIGFFSTFCGKFGIQPGYNLDC 392
            KYYGRGP+Q++WNYNY                    A D V++FK+A+WFWM                     N+V+     G+G T   ING +EC  G N A  N R+G++  +C +  + PG NL C
Sbjct:  175 KYYGRGPLQISWNYNY--GPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM---------------------NNVHGVMPQGFGATIRAINGALEC-NGNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 5.016e-14
Identity = 48/129 (37.21%), Postives = 68/129 (52.71%), Query Frame = 3
Query:    6 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWND-AVR-NRIGFFSTFCGKFGIQPGYNL 386
            KY  RGPIQLT N+NY                      DP++SFK+A+WFWM+    KPSCH+++      +AN   A R+P  G+  NII+       G +D AVR + IGF+  +C   G+  G++L
Sbjct:  235 KYSPRGPIQLTHNFNY--GLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVL-----NANSA-ANRIPNKGVIGNIISRAF----GHDDFAVRSSSIGFYKRYCDMLGVSYGHDL 351          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.235e-12
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 3
Query:  159 MTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 296
            MT Q  KPSCH+VIT+ W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.594e-12
Identity = 39/128 (30.47%), Postives = 60/128 (46.88%), Query Frame = 3
Query:    9 YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDC 392
            Y+GRGPIQL+WN+NY                    + D V+SFK+A+W+WM  Q  +P  ++                   G+G T   ING +EC       V+ R+ +++ +C + G+  G NL C
Sbjct:  166 YHGRGPIQLSWNFNY--GPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM--QHVRPVINQ-------------------GFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
The following BLAST results are available for this feature:
BLAST of CX300444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIB_MAIZE7.738e-1535.38Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI6_ORYSJ1.320e-1432.03Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_MAIZE1.724e-1434.62Endochitinase A OS=Zea mays PE=1 SV=1[more]
AGI_URTDI5.016e-1437.21Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI4_ARAHY1.235e-1265.22Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]
CHI4_PHAVU3.594e-1230.47Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]

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Properties
Property NameValue
Genbank descriptionC07010C10SK SaltLeaf1 Citrus clementina cDNA clone C07010C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300444 ID=CX300444; Name=CX300444; organism=Citrus clementina; type=EST; length=448bp
GAGGGAAGTACTATGGCCGAGGTCCAATTCAACTCACTTGGAATTACAAT
TACTTACGGTGCGGAGAAGACCTAGGGCTAGGAGAGGAGTTGTTGAACAA
TCCAGACCTTCTTGCTACTGATCCAGTACTATCATTCAAGTCAGCAATCT
GGTTCTGGATGACCGCACAGCCACCAAAGCCATCATGCCACGAAGTCATT
ACCGACGAATGGAAACCATCAGCAAATGACGTAAACGCCGGCCGGCTTCC
GGGATACGGTCTAACCACAAATATAATCAACGGTGGAATTGAATGTGGCC
AAGGTTGGAATGACGCTGTACGTAACCGTATTGGGTTCTTTAGCACTTTC
TGTGGCAAGTTTGGGATTCAGCCTGGTTACAATCTTGATTGCTACCACCA
ACAGCCTTTTTGCCCTATTCTGATGGCACGATCTATGTGATCATCATG
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