CX300446
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS12_PICTO (30S ribosomal protein S12P OS=Picrophilus torridus GN=rps12p PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 3.937e-28 Identity = 56/101 (55.45%), Postives = 76/101 (75.25%), Query Frame = 3 Query: 84 GMGAGRKLKTHRRTQRWADNSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG 383 G+ AG+KL R+T RW+D YK+ L + K P G+ AKGIV+EK+GIEAKQPNS IRKC ++QLIKNG++++AF P DG +NYI+E+DEV++ G G Sbjct: 4 GLNAGKKLMKSRKTYRWSDRDYKRRVLNLKKKSDPLEGAPQAKGIVIEKVGIEAKQPNSGIRKCVKIQLIKNGRQLSAFAPGDGAINYIDEHDEVVVEGIG 104
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS12_METST (30S ribosomal protein S12P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps12p PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 5.141e-28 Identity = 60/101 (59.41%), Postives = 74/101 (73.27%), Query Frame = 3 Query: 84 GMGAGRKLKTHRRTQRWADNSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG 383 G+ A +KLK +R+ RW D YK+ LG K P GS A+GIV+EK+GIEAKQPNSAIRKC RVQLIKNGK+I AF P DG + +I+E+DEV+I G G Sbjct: 3 GLFAAKKLKDNRQNFRWKDTQYKRKTLGLNIKADPLEGSPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQITAFAPGDGAIGFIDEHDEVMIEGIG 103
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS12_HALSA (30S ribosomal protein S12P OS=Halobacterium salinarium GN=rps12p PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 3.332e-27 Identity = 59/103 (57.28%), Postives = 74/103 (71.84%), Query Frame = 3 Query: 78 TRGMGAGRKLKTHRRTQRWADNSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG 383 T G A RKLK R+ +RW+D+ Y + G K P G+ +GIVLEK+GIEAKQPNSAIRKC RVQLIKNGK++ AF P DG +++I+E+DEV IAG G Sbjct: 2 TNGKYAARKLKKDRQQRRWSDSEYARRERGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIG 104
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS12_HALWD (30S ribosomal protein S12P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps12p PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 1.266e-26 Identity = 58/101 (57.43%), Postives = 73/101 (72.28%), Query Frame = 3 Query: 84 GMGAGRKLKTHRRTQRWADNSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG 383 G A RKLK R+ +RW+D+ Y + G K P G+ +GIVLEK+GIEAKQPNSAIRKC RVQLIKNGK++ AF P DG +++I+E+DEV IAG G Sbjct: 4 GKYAARKLKQDRQQRRWSDSEYARRERGLGAKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIG 104
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS12_METKA (30S ribosomal protein S12P OS=Methanopyrus kandleri GN=rps12p PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 1.654e-26 Identity = 58/101 (57.43%), Postives = 73/101 (72.28%), Query Frame = 3 Query: 84 GMGAGRKLKTHRRTQRWADNSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG 383 G A RKL+ R+ RW D YK+ L +E P G+ A+GIVLEK+G+EAKQPNSAIRKC RVQLIKNGK++ AF P DG ++YI+E+DEV+I G G Sbjct: 9 GEFAARKLREKRKKFRWKDERYKRRMLKLDEKADPLEGAPQARGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAIDYIDEHDEVVIEGIG 109
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS12_THEVO (30S ribosomal protein S12P OS=Thermoplasma volcanium GN=rps12p PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 2.160e-26 Identity = 57/101 (56.44%), Postives = 73/101 (72.28%), Query Frame = 3 Query: 84 GMGAGRKLKTHRRTQRWADNSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG 383 G+ AGRKL +R+ RW+D YK+ L + K P G+ AKGI +EK+GIEAKQPNSAIRKC +VQLIKNG++I AF DG +NYI+E+DEV + G G Sbjct: 4 GLNAGRKLLENRKKFRWSDRDYKRRVLQLKRKSDPLEGAPQAKGIAIEKVGIEAKQPNSAIRKCVKVQLIKNGRQITAFAVGDGAINYIDEHDEVTVEGIG 104
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS12_HALMA (30S ribosomal protein S12P OS=Haloarcula marismortui GN=rps12p PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 2.160e-26 Identity = 58/101 (57.43%), Postives = 71/101 (70.30%), Query Frame = 3 Query: 84 GMGAGRKLKTHRRTQRWADNSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG 383 G A RKLK R+ RW+D Y + G K P G+ +GIVLEK+GIEAKQPNSAIRKC RVQLIKNGK++ AF P DG +++I+E+DEV IAG G Sbjct: 4 GKYAARKLKKDRQKHRWSDTDYARRERGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIG 104
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS12_THEAC (30S ribosomal protein S12P OS=Thermoplasma acidophilum GN=rps12p PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 2.821e-26 Identity = 57/101 (56.44%), Postives = 73/101 (72.28%), Query Frame = 3 Query: 84 GMGAGRKLKTHRRTQRWADNSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG 383 G+ AGRKL +R+ RW+D YK+ L + K P G+ AKGI +EK+GIEAKQPNSAIRKC +VQLIKNG++I AF DG +NYI+E+DEV + G G Sbjct: 4 GINAGRKLLENRKKFRWSDRDYKRRVLQLKRKSDPLEGAPQAKGIAIEKVGIEAKQPNSAIRKCVKVQLIKNGRQITAFAVGDGAINYIDEHDEVTVEGIG 104
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS12_NATPD (30S ribosomal protein S12P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps12p PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 2.821e-26 Identity = 58/101 (57.43%), Postives = 72/101 (71.29%), Query Frame = 3 Query: 84 GMGAGRKLKTHRRTQRWADNSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG 383 G A RKLK R+ RW+D+ Y + G K P G+ +GIVLEK+GIEAKQPNSAIRKC RVQLIKNGK++ AF P DG +++I+E+DEV IAG G Sbjct: 4 GKYAARKLKQDRQKHRWSDSDYARRARGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIG 104
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS12_METTH (30S ribosomal protein S12P OS=Methanobacterium thermoautotrophicum GN=rps12p PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 3.684e-26 Identity = 56/101 (55.45%), Postives = 74/101 (73.27%), Query Frame = 3 Query: 84 GMGAGRKLKTHRRTQRWADNSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG 383 G+ A +KLK+ R+ +W D YK+ L + K P G+ A+GIV+EK+GIEAKQPNSAIRKC RVQLIKNGK+I AF P DG + +I+E+DEV++ G G Sbjct: 3 GLFAAKKLKSKRQKFKWKDTHYKRRSLRLDVKADPLEGAPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQITAFAPGDGAIGFIDEHDEVVVEGIG 103 The following BLAST results are available for this feature:
BLAST of CX300446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300446 ID=CX300446; Name=CX300446; organism=Citrus clementina; type=EST; length=394bpback to top |