CX300446

Overview
NameCX300446
Unique NameCX300446
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length394
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig376 contig Ccv1_Contig376:8..401. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS12_PICTO (30S ribosomal protein S12P OS=Picrophilus torridus GN=rps12p PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.937e-28
Identity = 56/101 (55.45%), Postives = 76/101 (75.25%), Query Frame = 3
Query:   84 GMGAGRKLKTHRRTQRWADNSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG 383
            G+ AG+KL   R+T RW+D  YK+  L  + K  P  G+  AKGIV+EK+GIEAKQPNS IRKC ++QLIKNG++++AF P DG +NYI+E+DEV++ G G
Sbjct:    4 GLNAGKKLMKSRKTYRWSDRDYKRRVLNLKKKSDPLEGAPQAKGIVIEKVGIEAKQPNSGIRKCVKIQLIKNGRQLSAFAPGDGAINYIDEHDEVVVEGIG 104          
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS12_METST (30S ribosomal protein S12P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps12p PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.141e-28
Identity = 60/101 (59.41%), Postives = 74/101 (73.27%), Query Frame = 3
Query:   84 GMGAGRKLKTHRRTQRWADNSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG 383
            G+ A +KLK +R+  RW D  YK+  LG   K  P  GS  A+GIV+EK+GIEAKQPNSAIRKC RVQLIKNGK+I AF P DG + +I+E+DEV+I G G
Sbjct:    3 GLFAAKKLKDNRQNFRWKDTQYKRKTLGLNIKADPLEGSPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQITAFAPGDGAIGFIDEHDEVMIEGIG 103          
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS12_HALSA (30S ribosomal protein S12P OS=Halobacterium salinarium GN=rps12p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.332e-27
Identity = 59/103 (57.28%), Postives = 74/103 (71.84%), Query Frame = 3
Query:   78 TRGMGAGRKLKTHRRTQRWADNSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG 383
            T G  A RKLK  R+ +RW+D+ Y +   G   K  P  G+   +GIVLEK+GIEAKQPNSAIRKC RVQLIKNGK++ AF P DG +++I+E+DEV IAG G
Sbjct:    2 TNGKYAARKLKKDRQQRRWSDSEYARRERGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIG 104          
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS12_HALWD (30S ribosomal protein S12P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps12p PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.266e-26
Identity = 58/101 (57.43%), Postives = 73/101 (72.28%), Query Frame = 3
Query:   84 GMGAGRKLKTHRRTQRWADNSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG 383
            G  A RKLK  R+ +RW+D+ Y +   G   K  P  G+   +GIVLEK+GIEAKQPNSAIRKC RVQLIKNGK++ AF P DG +++I+E+DEV IAG G
Sbjct:    4 GKYAARKLKQDRQQRRWSDSEYARRERGLGAKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIG 104          
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS12_METKA (30S ribosomal protein S12P OS=Methanopyrus kandleri GN=rps12p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.654e-26
Identity = 58/101 (57.43%), Postives = 73/101 (72.28%), Query Frame = 3
Query:   84 GMGAGRKLKTHRRTQRWADNSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG 383
            G  A RKL+  R+  RW D  YK+  L  +E   P  G+  A+GIVLEK+G+EAKQPNSAIRKC RVQLIKNGK++ AF P DG ++YI+E+DEV+I G G
Sbjct:    9 GEFAARKLREKRKKFRWKDERYKRRMLKLDEKADPLEGAPQARGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAIDYIDEHDEVVIEGIG 109          
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS12_THEVO (30S ribosomal protein S12P OS=Thermoplasma volcanium GN=rps12p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.160e-26
Identity = 57/101 (56.44%), Postives = 73/101 (72.28%), Query Frame = 3
Query:   84 GMGAGRKLKTHRRTQRWADNSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG 383
            G+ AGRKL  +R+  RW+D  YK+  L  + K  P  G+  AKGI +EK+GIEAKQPNSAIRKC +VQLIKNG++I AF   DG +NYI+E+DEV + G G
Sbjct:    4 GLNAGRKLLENRKKFRWSDRDYKRRVLQLKRKSDPLEGAPQAKGIAIEKVGIEAKQPNSAIRKCVKVQLIKNGRQITAFAVGDGAINYIDEHDEVTVEGIG 104          
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS12_HALMA (30S ribosomal protein S12P OS=Haloarcula marismortui GN=rps12p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.160e-26
Identity = 58/101 (57.43%), Postives = 71/101 (70.30%), Query Frame = 3
Query:   84 GMGAGRKLKTHRRTQRWADNSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG 383
            G  A RKLK  R+  RW+D  Y +   G   K  P  G+   +GIVLEK+GIEAKQPNSAIRKC RVQLIKNGK++ AF P DG +++I+E+DEV IAG G
Sbjct:    4 GKYAARKLKKDRQKHRWSDTDYARRERGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIG 104          
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS12_THEAC (30S ribosomal protein S12P OS=Thermoplasma acidophilum GN=rps12p PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.821e-26
Identity = 57/101 (56.44%), Postives = 73/101 (72.28%), Query Frame = 3
Query:   84 GMGAGRKLKTHRRTQRWADNSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG 383
            G+ AGRKL  +R+  RW+D  YK+  L  + K  P  G+  AKGI +EK+GIEAKQPNSAIRKC +VQLIKNG++I AF   DG +NYI+E+DEV + G G
Sbjct:    4 GINAGRKLLENRKKFRWSDRDYKRRVLQLKRKSDPLEGAPQAKGIAIEKVGIEAKQPNSAIRKCVKVQLIKNGRQITAFAVGDGAINYIDEHDEVTVEGIG 104          
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS12_NATPD (30S ribosomal protein S12P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps12p PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.821e-26
Identity = 58/101 (57.43%), Postives = 72/101 (71.29%), Query Frame = 3
Query:   84 GMGAGRKLKTHRRTQRWADNSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG 383
            G  A RKLK  R+  RW+D+ Y +   G   K  P  G+   +GIVLEK+GIEAKQPNSAIRKC RVQLIKNGK++ AF P DG +++I+E+DEV IAG G
Sbjct:    4 GKYAARKLKQDRQKHRWSDSDYARRARGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIG 104          
BLAST of CX300446 vs. ExPASy Swiss-Prot
Match: RS12_METTH (30S ribosomal protein S12P OS=Methanobacterium thermoautotrophicum GN=rps12p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.684e-26
Identity = 56/101 (55.45%), Postives = 74/101 (73.27%), Query Frame = 3
Query:   84 GMGAGRKLKTHRRTQRWADNSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG 383
            G+ A +KLK+ R+  +W D  YK+  L  + K  P  G+  A+GIV+EK+GIEAKQPNSAIRKC RVQLIKNGK+I AF P DG + +I+E+DEV++ G G
Sbjct:    3 GLFAAKKLKSKRQKFKWKDTHYKRRSLRLDVKADPLEGAPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQITAFAPGDGAIGFIDEHDEVVVEGIG 103          
The following BLAST results are available for this feature:
BLAST of CX300446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS12_PICTO3.937e-2855.4530S ribosomal protein S12P OS=Picrophilus torridus... [more]
RS12_METST5.141e-2859.4130S ribosomal protein S12P OS=Methanosphaera stadt... [more]
RS12_HALSA3.332e-2757.2830S ribosomal protein S12P OS=Halobacterium salina... [more]
RS12_HALWD1.266e-2657.4330S ribosomal protein S12P OS=Haloquadratum walsby... [more]
RS12_METKA1.654e-2657.4330S ribosomal protein S12P OS=Methanopyrus kandler... [more]
RS12_THEVO2.160e-2656.4430S ribosomal protein S12P OS=Thermoplasma volcani... [more]
RS12_HALMA2.160e-2657.4330S ribosomal protein S12P OS=Haloarcula marismort... [more]
RS12_THEAC2.821e-2656.4430S ribosomal protein S12P OS=Thermoplasma acidoph... [more]
RS12_NATPD2.821e-2657.4330S ribosomal protein S12P OS=Natronomonas pharaon... [more]
RS12_METTH3.684e-2655.4530S ribosomal protein S12P OS=Methanobacterium the... [more]

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Properties
Property NameValue
Genbank descriptionC07010D01SK SaltLeaf1 Citrus clementina cDNA clone C07010D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300446 ID=CX300446; Name=CX300446; organism=Citrus clementina; type=EST; length=394bp
GGTGTTTCTTCTCTTCGCCTTAACTTCTACACAGCCTCGTAGCAGTCGAG
TAACTACAATCAGGAATCATGGGGAAGACACGTGGTATGGGAGCTGGTCG
CAAGCTGAAGACTCACCGTAGGACTCAAAGGTGGGCTGATAATTCATACA
AAAAGTCTCACCTCGGCAATGAGTGGAAGAAGCCATTTGCTGGTTCTTCC
CATGCTAAAGGAATTGTTCTTGAGAAGATAGGTATTGAAGCTAAGCAGCC
TAACTCTGCTATTCGTAAGTGTGCTAGAGTTCAACTTATCAAAAACGGAA
AGAAGATTGCCGCTTTTGTTCCAAATGATGGTTGCTTGAACTATATTGAA
GAAAATGATGAGGTGTTGATTGCTGGATTTGGACGTAAGGGACA
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