CX300452

Overview
NameCX300452
Unique NameCX300452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length413
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300452 vs. ExPASy Swiss-Prot
Match: MCFB_DICDI (Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.245e-14
Identity = 44/139 (31.65%), Postives = 69/139 (49.64%), Query Frame = 2
Query:    2 GAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGKLQDSFFASFALGWLITNGAGLASYPIDTVRRRMMM--TSGEAVKYKSSLDA 412
            GAAG +SLL  Y LD  R+RL       K      +NG+ D  +  ++ +G+AGLY+G   S +G+  Y  + F  Y++LK   +      +   S   G +    A   +YPID +RRR+ +    G+ + Y  + DA
Sbjct:  249 GAAGVTSLLCTYPLDLIRSRLTVQVFGNK------YNGIADTCKMIIREEGVAGLYKGLFASALGVAPYVAINFTTYENLKKTFIPKDTTPTVVQSLTFGAISGATAQTLTYPIDLIRRRLQVQGIGGKDILYNGTFDA 381          
BLAST of CX300452 vs. ExPASy Swiss-Prot
Match: TPC1_PHANO (Mitochondrial thiamine pyrophosphate carrier 1 OS=Phaeosphaeria nodorum GN=TPC1 PE=3 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 7.498e-11
Identity = 39/130 (30.00%), Postives = 63/130 (48.46%), Query Frame = 2
Query:    8 AGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGKLQDSFFASFALGWLITNGAG-LASYPIDTVRRRMMMTSGEAVKY 394
            AGA++    Y LD  RTR A       +G +R +  +V   +   + +G  G +RG       I+ Y GL+F  Y+SLKPV+    L     +S A+  ++ +     A YP+DT R+R+ +      +Y
Sbjct:  133 AGAAATTVTYPLDLLRTRFA------AQGKDRVYTSIVASLKSIAQHEGPTGFFRGLGAGVSQIVPYMGLFFASYESLKPVMADSPLPLPLGSSDAVAGVVASVVSKTAVYPLDTTRKRLQVQGPNRARY 256          
The following BLAST results are available for this feature:
BLAST of CX300452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
MCFB_DICDI7.245e-1431.65Mitochondrial substrate carrier family protein B O... [more]
TPC1_PHANO7.498e-1130.00Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC07010D07SK SaltLeaf1 Citrus clementina cDNA clone C07010D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300452 ID=CX300452; Name=CX300452; organism=Citrus clementina; type=EST; length=413bp
AGGTGCTGCTGGTGCTTCATCCCTTCTCTTTGTTTACTCCTTGGACTATG
CTCGTACCCGTCTGGCCAATGATGCCAAAGCTGCGAAGAAGGGAGGAGAG
AGGCAATTCAATGGGCTGGTTGATGTCTACAGAAAGACATTGAAATCTGA
TGGCATTGCTGGGCTTTACCGTGGTTTCAACATTTCATGTGTTGGAATCA
TTGTGTACCGTGGTCTTTACTTCGGCATGTATGATTCTCTGAAGCCAGTG
GTCTTGACTGGAAAGTTGCAGGATAGTTTCTTTGCTAGCTTCGCCCTTGG
GTGGCTCATCACTAATGGTGCTGGTCTTGCTTCCTACCCAATTGACACTG
TCCGTAGAAGGATGATGATGACATCTGGTGAGGCTGTCAAGTACAAGAGC
TCTCTTGATGCAT
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