CX300460

Overview
NameCX300460
Unique NameCX300460
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length591
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300460 vs. ExPASy Swiss-Prot
Match: VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.314e-13
Identity = 35/86 (40.70%), Postives = 58/86 (67.44%), Query Frame = 1
Query:    1 MNDEFSRVLHQQMEFFSSNPSA-DTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKN 255
            +N EF   L + M++   +P     L +V+ +V+E++ +M+ENIEK+L+RG++IELLVDKT  ++  A  FR Q  ++RR +W +N
Sbjct:  171 LNREFGSKLKEHMQYCVDHPDEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKIRRKMWFEN 256          
BLAST of CX300460 vs. ExPASy Swiss-Prot
Match: VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.314e-13
Identity = 35/86 (40.70%), Postives = 58/86 (67.44%), Query Frame = 1
Query:    1 MNDEFSRVLHQQMEFFSSNPSA-DTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKN 255
            +N EF   L + M++   +P     L +V+ +VSE++ +M+ENIEK+L+RG++IELLVDKT  ++  A  FR    ++RR +W++N
Sbjct:  106 LNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTTGTQMRRKMWLQN 191          
BLAST of CX300460 vs. ExPASy Swiss-Prot
Match: VAMP7_PONAB (Vesicle-associated membrane protein 7 OS=Pongo abelii GN=VAMP7 PE=2 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 2.241e-13
Identity = 36/85 (42.35%), Postives = 54/85 (63.53%), Query Frame = 1
Query:    1 MNDEFSRVLHQQMEFFSSNPSADTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKN 255
            MN EFS VL  Q++  S N   D +   + +V E++ IMV NI+ + +RG+R+ELL+DKT  + D +  F+  S+ L RA+ MKN
Sbjct:  102 MNSEFSSVLAAQLKHHSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKN 186          
BLAST of CX300460 vs. ExPASy Swiss-Prot
Match: VAMP7_HUMAN (Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 2.241e-13
Identity = 36/85 (42.35%), Postives = 54/85 (63.53%), Query Frame = 1
Query:    1 MNDEFSRVLHQQMEFFSSNPSADTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKN 255
            MN EFS VL  Q++  S N   D +   + +V E++ IMV NI+ + +RG+R+ELL+DKT  + D +  F+  S+ L RA+ MKN
Sbjct:  102 MNSEFSSVLAAQLKHHSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKN 186          
BLAST of CX300460 vs. ExPASy Swiss-Prot
Match: VAMP7_BOVIN (Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.241e-13
Identity = 36/85 (42.35%), Postives = 54/85 (63.53%), Query Frame = 1
Query:    1 MNDEFSRVLHQQMEFFSSNPSADTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKN 255
            MN EFS VL  Q++  S N   D +   + +V E++ IMV NI+ + +RG+R+ELL+DKT  + D +  F+  S+ L RA+ MKN
Sbjct:  102 MNSEFSSVLAAQLKHHSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKN 186          
BLAST of CX300460 vs. ExPASy Swiss-Prot
Match: VAMP7_CHICK (Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.993e-13
Identity = 34/85 (40.00%), Postives = 55/85 (64.71%), Query Frame = 1
Query:    1 MNDEFSRVLHQQMEFFSSNPSADTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKN 255
            MN EFS VL  Q+++ S +   D +   + +V E++ IMV NI+ + +RG+++ELL+DKT  + D +  F+  S+ L RA+ MKN
Sbjct:  102 MNSEFSSVLAAQLKYHSESKGTDQVAETQAQVDELKGIMVRNIDLVAQRGEKLELLIDKTENLVDSSVTFKTTSRNLARAMCMKN 186          
BLAST of CX300460 vs. ExPASy Swiss-Prot
Match: VAM7A_DICDI (Vesicle-associated membrane protein 7A OS=Dictyostelium discoideum GN=vamp7A PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.897e-12
Identity = 34/83 (40.96%), Postives = 56/83 (67.47%), Query Frame = 1
Query:    7 DEFSRVLHQQMEFFSSNPSADTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKN 255
            D F RVL ++M+++S NP ++ +N V  +VSE +  + + IEK + RG++IE++VDKT  +Q  +F F+  S  L+R LW +N
Sbjct:  106 DPFIRVLEERMKYYS-NPKSNKMNLVMDQVSEAKGALTDAIEKTIHRGEKIEIIVDKTERLQSESFVFKSNSVALKRKLWWQN 187          
BLAST of CX300460 vs. ExPASy Swiss-Prot
Match: VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.674e-11
Identity = 30/86 (34.88%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    1 MNDEFSRVLHQQMEFFSSNPSA-DTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKN 255
            +N EF  V+ + M +   +    + L +V+ +VSE+++IM+ENI+K ++RG+ + +L DKT  ++  A  ++KQ  ++RR LW +N
Sbjct:  107 LNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENLTVLTDKTENLRSQAQEYKKQGTQVRRKLWYQN 192          
The following BLAST results are available for this feature:
BLAST of CX300460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
VA725_ARATH1.314e-1340.70Vesicle-associated membrane protein 725 OS=Arabido... [more]
VA721_ARATH1.314e-1340.70Vesicle-associated membrane protein 721 OS=Arabido... [more]
VAMP7_PONAB2.241e-1342.35Vesicle-associated membrane protein 7 OS=Pongo abe... [more]
VAMP7_HUMAN2.241e-1342.35Vesicle-associated membrane protein 7 OS=Homo sapi... [more]
VAMP7_BOVIN2.241e-1342.35Vesicle-associated membrane protein 7 OS=Bos tauru... [more]
VAMP7_CHICK4.993e-1340.00Vesicle-associated membrane protein 7 OS=Gallus ga... [more]
VAM7A_DICDI1.897e-1240.96Vesicle-associated membrane protein 7A OS=Dictyost... [more]
VA724_ARATH4.674e-1134.88Vesicle-associated membrane protein 724 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionC07010E03SK SaltLeaf1 Citrus clementina cDNA clone C07010E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300460 ID=CX300460; Name=CX300460; organism=Citrus clementina; type=EST; length=591bp
ATGAATGATGAGTTTTCAAGGGTATTGCATCAGCAGATGGAATTTTTCTC
CAGCAATCCTAGTGCAGATACTCTCAATCGTGTGAGAGGGGAAGTTAGTG
AGATACGCACCATCATGGTGGAGAATATTGAAAAAATATTGGAGAGAGGT
GATAGGATTGAGCTTCTTGTTGACAAAACTGCAACAATGCAAGACGGCGC
ATTTCACTTTAGGAAACAGTCTAAGCGCCTTCGTAGAGCGCTTTGGATGA
AAAATGCTAAGCTATTGGCCCTCTTGACAGGCTTAATTGTTCTGTTGCTG
TACATAATAATTGCTGCTGCTTGTGGAGGCATCACTTTACCTTCATGCAG
ATCTTGAGTCGTGGTCAACTGGTGTTAAATTACTGCTCGGGTGTGCATTG
ATGTTGTTTGTTGTCAATTATGTGAATTAATCTTGGACGGGTTTCCTTGG
TTTTGTGGGTCAACTATTTAAGGAGTATGTGGAAATATAGTATCTATACA
GCTGCAAGGTGCCAGAAATAATCCTGCAGATGCTCTCATTATAACATTCA
GTATAAGGGACATATCTCGGAAGTCTGACGAGATGCCATCT
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