CX300467

Overview
NameCX300467
Unique NameCX300467
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length504
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig838 contig Ccv1_Contig838:1..504. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_AERHH (Malate dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=mdh PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.306e-23
Identity = 54/119 (45.38%), Postives = 72/119 (60.50%), Query Frame = 3
Query:   18 SFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK 374
            SFT +E   +T RIQN GTEVVEAKAG GSATLSM  AA  F  + ++GL+G+A V+ECA+V        FFA  + LG+ G E +   G L+ +E+  ++     L   IQ G+ F K
Sbjct:  193 SFTADEVAAMTKRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLIKGLQGEANVIECAYVEGDGKHATFFAQPILLGKNGVETVLDYGKLSAFEQEAMDGMLATLKADIQLGVEFVK 311          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_SHEPA (Malate dehydrogenase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=mdh PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.236e-23
Identity = 59/119 (49.58%), Postives = 70/119 (58.82%), Query Frame = 3
Query:   18 SFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK 374
            SFT  E   LT RIQN GTEVVEAKAG GSATLSM  AA  F  + +RGL+G+A VVECA+V        FFA  V LG+ G EE+   G ++ +E    +     L   IQ GI F K
Sbjct:  193 SFTDAEVAALTTRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLVRGLQGEANVVECAYVDGGSEHAEFFAQPVVLGKNGVEEVLAYGEVSAFEANARDAMLDTLQADIQLGIDFVK 311          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_SHEB9 (Malate dehydrogenase OS=Shewanella baltica (strain OS195) GN=mdh PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.236e-23
Identity = 56/119 (47.06%), Postives = 72/119 (60.50%), Query Frame = 3
Query:   18 SFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK 374
            +FT EE   LT RIQN GTEVVEAKAG GSATLSM  AA  F  + +RGL+G+A +VECA+V        FFA  V LG+ G E++   G ++ +E    +     L G I+ G+ F K
Sbjct:  193 TFTDEEVASLTTRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLVRGLQGEANIVECAYVDGGSEHAEFFAQPVLLGKNGIEKVLPYGEVSAFEANARDSMLDTLKGDIKLGVDFVK 311          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_SHEB8 (Malate dehydrogenase OS=Shewanella baltica (strain OS185) GN=mdh PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.236e-23
Identity = 56/119 (47.06%), Postives = 72/119 (60.50%), Query Frame = 3
Query:   18 SFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK 374
            +FT EE   LT RIQN GTEVVEAKAG GSATLSM  AA  F  + +RGL+G+A +VECA+V        FFA  V LG+ G E++   G ++ +E    +     L G I+ G+ F K
Sbjct:  193 TFTDEEVASLTTRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLVRGLQGEANIVECAYVDGGSEHAEFFAQPVLLGKNGIEKVLPYGEVSAFEANARDSMLDTLKGDIKLGVDFVK 311          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_SHEB5 (Malate dehydrogenase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=mdh PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.236e-23
Identity = 56/119 (47.06%), Postives = 72/119 (60.50%), Query Frame = 3
Query:   18 SFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK 374
            +FT EE   LT RIQN GTEVVEAKAG GSATLSM  AA  F  + +RGL+G+A +VECA+V        FFA  V LG+ G E++   G ++ +E    +     L G I+ G+ F K
Sbjct:  193 TFTDEEVASLTTRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLVRGLQGEANIVECAYVDGGSEHAEFFAQPVLLGKNGIEKVLPYGEVSAFEANARDSMLDTLKGDIKLGVDFVK 311          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_SHEB2 (Malate dehydrogenase OS=Shewanella baltica (strain OS223) GN=mdh PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.236e-23
Identity = 56/119 (47.06%), Postives = 72/119 (60.50%), Query Frame = 3
Query:   18 SFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK 374
            +FT EE   LT RIQN GTEVVEAKAG GSATLSM  AA  F  + +RGL+G+A +VECA+V        FFA  V LG+ G E++   G ++ +E    +     L G I+ G+ F K
Sbjct:  193 TFTDEEVASLTTRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLVRGLQGEANIVECAYVDGGSEHAEFFAQPVLLGKNGIEKVLPYGEVSAFEANARDSMLDTLKGDIKLGVDFVK 311          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_SALTY (Malate dehydrogenase OS=Salmonella typhimurium GN=mdh PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 8.236e-23
Identity = 59/123 (47.97%), Postives = 74/123 (60.16%), Query Frame = 3
Query:    9 PPCSFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 377
            P  SFT++EA  LT RIQN GTEVVEAKAG GSATLSM  AA  F  + +R L+G+ GVVECA+V        FF+  + LG+ G EE   +G L+ +E+  L+     L   IQ G  F  K
Sbjct:  190 PGVSFTEQEAAELTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEKGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQHSLDAMLDTLKKDIQLGEDFINK 312          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_SALTI (Malate dehydrogenase OS=Salmonella typhi GN=mdh PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.236e-23
Identity = 59/123 (47.97%), Postives = 74/123 (60.16%), Query Frame = 3
Query:    9 PPCSFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 377
            P  SFT++EA  LT RIQN GTEVVEAKAG GSATLSM  AA  F  + +R L+G+ GVVECA+V        FF+  + LG+ G EE   +G L+ +E+  L+     L   IQ G  F  K
Sbjct:  190 PGVSFTEQEAAELTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEKGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSTFEQHSLDAMLDTLKKDIQLGEDFINK 312          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_SALSV (Malate dehydrogenase OS=Salmonella schwarzengrund (strain CVM19633) GN=mdh PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.236e-23
Identity = 59/123 (47.97%), Postives = 74/123 (60.16%), Query Frame = 3
Query:    9 PPCSFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 377
            P  SFT++EA  LT RIQN GTEVVEAKAG GSATLSM  AA  F  + +R L+G+ GVVECA+V        FF+  + LG+ G EE   +G L+ +E+  L+     L   IQ G  F  K
Sbjct:  190 PGVSFTEQEAAELTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEKGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQHSLDAMLDTLKKDIQLGEDFINK 312          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_SALPK (Malate dehydrogenase OS=Salmonella paratyphi A (strain AKU_12601) GN=mdh PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.236e-23
Identity = 59/123 (47.97%), Postives = 74/123 (60.16%), Query Frame = 3
Query:    9 PPCSFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 377
            P  SFT++EA  LT RIQN GTEVVEAKAG GSATLSM  AA  F  + +R L+G+ GVVECA+V        FF+  + LG+ G EE   +G L+ +E+  L+     L   IQ G  F  K
Sbjct:  190 PGVSFTEQEAAELTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEKGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQHSLDAMLDTLKKDIQLGEDFINK 312          
The following BLAST results are available for this feature:
BLAST of CX300467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
MDH_AERHH6.306e-2345.38Malate dehydrogenase OS=Aeromonas hydrophila subsp... [more]
MDH_SHEPA8.236e-2349.58Malate dehydrogenase OS=Shewanella pealeana (strai... [more]
MDH_SHEB98.236e-2347.06Malate dehydrogenase OS=Shewanella baltica (strain... [more]
MDH_SHEB88.236e-2347.06Malate dehydrogenase OS=Shewanella baltica (strain... [more]
MDH_SHEB58.236e-2347.06Malate dehydrogenase OS=Shewanella baltica (strain... [more]
MDH_SHEB28.236e-2347.06Malate dehydrogenase OS=Shewanella baltica (strain... [more]
MDH_SALTY8.236e-2347.97Malate dehydrogenase OS=Salmonella typhimurium GN=... [more]
MDH_SALTI8.236e-2347.97Malate dehydrogenase OS=Salmonella typhi GN=mdh PE... [more]
MDH_SALSV8.236e-2347.97Malate dehydrogenase OS=Salmonella schwarzengrund ... [more]
MDH_SALPK8.236e-2347.97Malate dehydrogenase OS=Salmonella paratyphi A (st... [more]

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Properties
Property NameValue
Genbank descriptionC07010E10SK SaltLeaf1 Citrus clementina cDNA clone C07010E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300467 ID=CX300467; Name=CX300467; organism=Citrus clementina; type=EST; length=504bp
AGGTTAAGCCTCCTTGTAGCTTCACTCAAGAAGAAGCTGAATACCTGACG
AACCGCATACAAAATGGTGGAACAGAAGTTGTTGAGGCAAAAGCTGGGGC
TGGCTCTGCAACACTCTCAATGGCTTATGCAGCGGTTGAATTTGCGGATG
CATGCCTCCGTGGGCTGAGAGGAGATGCTGGTGTTGTGGAATGTGCATTC
GTAGCTTCTCAGGTGACGGAACTCCCTTTCTTCGCATCCAAGGTACGGCT
TGGTCGCCAAGGAGCTGAAGAAATCTTCCAACTTGGACCTTTAAATGAAT
ATGAGAGGATTGGCTTGGAGAAAGCGAAGAAAGAGTTAGCTGGAAGCATT
CAAAAGGGCATCTCCTTCAGCAAGAAATGAAGCGATGCCAAGAAAAATTC
CATCGGTTAAGTTTATTATCGCTCTTGAGTCACCGTCTCCTGTAATTAGC
AAGCCTTAATGTTGTACCCAGAAACAGTCGGAAAATGTATTTTTCCAACA
AGCG
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