CX300467

Overview
NameCX300467
Unique NameCX300467
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length504
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDHM_MOUSE (Malate dehydrogenase, mitochondrial OS=Mus musculus GN=Mdh2 PE=1 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 8.236e-23
Identity = 56/122 (45.90%), Postives = 77/122 (63.11%), Query Frame = 3
Query:    9 PPCSFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK 374
            P   F Q++   LT RIQ  GTEVV+AKAGAGSATLSMAYA   F  + +  + G  GVVEC+FV S+ TE  +F++ + LG++G E+   +G +  +E   + +A  EL  SI+KG  F K
Sbjct:  214 PKVDFPQDQLATLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVQSKETECTYFSTPLLLGKKGLEKNLGIGKITPFEEKMIAEAIPELKASIKKGEDFVK 335          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_SHEFN (Malate dehydrogenase OS=Shewanella frigidimarina (strain NCIMB 400) GN=mdh PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.076e-22
Identity = 55/119 (46.22%), Postives = 72/119 (60.50%), Query Frame = 3
Query:   18 SFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK 374
            +FT EE   +T RIQN GTEVVEAKAG GSATLSM  AA  F  + +RGL+G+A VVECA+V        FFA  + LG+ G E++   G ++ +E    +     L G I+ G+ F K
Sbjct:  193 TFTDEEVAAMTTRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLVRGLQGEANVVECAYVDGGSEHATFFAQPILLGKNGVEKVLPYGEISAFEANARDAMLDTLKGDIKLGVEFVK 311          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_SALG2 (Malate dehydrogenase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=mdh PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.076e-22
Identity = 59/123 (47.97%), Postives = 74/123 (60.16%), Query Frame = 3
Query:    9 PPCSFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 377
            P  SFT++EA  LT RIQN GTEVVEAKAG GSATLSM  AA  F  + +R L+G+ GVVECA+V        FF+  + LG+ G EE   +G L+ +E+  L+     L   IQ G  F  K
Sbjct:  190 PGVSFTEQEAAELTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEKGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQHSLDAMLYTLKKDIQLGEDFINK 312          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDHM_RAT (Malate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Mdh2 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.076e-22
Identity = 55/122 (45.08%), Postives = 77/122 (63.11%), Query Frame = 3
Query:    9 PPCSFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK 374
            P   F Q++   LT RIQ  GTEVV+AKAGAGSATLSMAYA   F  + +  + G  GV+EC+FV S+ TE  +F++ + LG++G E+   +G +  +E   + +A  EL  SI+KG  F K
Sbjct:  214 PKVDFPQDQLATLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVIECSFVQSKETECTYFSTPLLLGKKGLEKNLGIGKITPFEEKMIAEAIPELKASIKKGEDFVK 335          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_SHEWM (Malate dehydrogenase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=mdh PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.405e-22
Identity = 56/119 (47.06%), Postives = 72/119 (60.50%), Query Frame = 3
Query:   18 SFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK 374
            SF+ EE   LT RIQN GTEVVEAKAG GSATLSM  AA  F  + +RGL+G+A VVECA+V        FFA  + LG+ G E++   G ++E+E    +     L   I+ G+ F K
Sbjct:  193 SFSDEEVAALTTRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLVRGLQGEANVVECAYVDGGSEHAEFFAQPILLGKNGVEKVLAYGDVSEFEANARDAMLDTLNADIKLGVEFVK 311          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_SHESW (Malate dehydrogenase OS=Shewanella sp. (strain W3-18-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.405e-22
Identity = 56/119 (47.06%), Postives = 72/119 (60.50%), Query Frame = 3
Query:   18 SFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK 374
            +F+ EE   LT RIQN GTEVVEAKAG GSATLSM  AA  F  + +RGL+G+A VVECA+V        FFA  V LG+ G E++   G ++ +E    +     L G I+ G+ F K
Sbjct:  193 TFSDEEVASLTKRIQNAGTEVVEAKAGGGSATLSMGQAACRFGMSLVRGLQGEANVVECAYVDGGSEHAEFFAQPVLLGKNGIEKVLPYGEVSAFEANARDSMLDTLKGDIKLGVDFVK 311          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_SHEPW (Malate dehydrogenase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=mdh PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.405e-22
Identity = 58/119 (48.74%), Postives = 70/119 (58.82%), Query Frame = 3
Query:   18 SFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK 374
            SFT EE   LT RIQN GTEVVEAKAG GSATLSM  AA  F  + +RGL+G+A VVECA+V        FFA  V LG+ G E++   G ++ +E    +     L   I  GI F K
Sbjct:  193 SFTDEEVAALTTRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLVRGLQGEANVVECAYVDGGSEHAEFFAQPVVLGKNGVEQVLAYGDVSAFEANARDAMLDTLKADIDLGIEFVK 311          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_SHEPC (Malate dehydrogenase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=mdh PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.405e-22
Identity = 56/119 (47.06%), Postives = 72/119 (60.50%), Query Frame = 3
Query:   18 SFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK 374
            +F+ EE   LT RIQN GTEVVEAKAG GSATLSM  AA  F  + +RGL+G+A VVECA+V        FFA  V LG+ G E++   G ++ +E    +     L G I+ G+ F K
Sbjct:  193 TFSDEEVASLTKRIQNAGTEVVEAKAGGGSATLSMGQAACRFGMSLVRGLQGEANVVECAYVDGGSEHAEFFAQPVLLGKNGIEKVLPYGEVSAFEANARDSMLDTLKGDIKLGVDFVK 311          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_SHEON (Malate dehydrogenase OS=Shewanella oneidensis GN=mdh PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 1.405e-22
Identity = 56/119 (47.06%), Postives = 72/119 (60.50%), Query Frame = 3
Query:   18 SFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK 374
            +F+ EE   LT RIQN GTEVVEAKAG GSATLSM  AA  F  + +RGL+G+A VVECA+V        FFA  V LG+ G E++   G ++ +E    +     L G I+ G+ F K
Sbjct:  193 TFSDEEVASLTKRIQNAGTEVVEAKAGGGSATLSMGQAACRFGMSLVRGLQGEANVVECAYVDGGSEHAEFFAQPVLLGKNGIEKVLPYGEVSAFEANARDSMLDTLKGDIKLGVDFVK 311          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_SHELP (Malate dehydrogenase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=mdh PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.405e-22
Identity = 57/119 (47.90%), Postives = 71/119 (59.66%), Query Frame = 3
Query:   18 SFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK 374
            SF+ EE   LT RIQN GTEVVEAKAG GSATLSM  AA  F  + +RGL+G+A VVECA+V        FFA  V LG+ G E++   G ++E+E    +     L   I  G+ F K
Sbjct:  193 SFSDEEVAALTTRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLVRGLQGEANVVECAYVDGGSEHADFFAQPVLLGKNGIEQVLAYGEVSEFEANARDAMLDTLKADITLGVDFVK 311          
The following BLAST results are available for this feature:
BLAST of CX300467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
MDHM_MOUSE8.236e-2345.90Malate dehydrogenase, mitochondrial OS=Mus musculu... [more]
MDH_SHEFN1.076e-2246.22Malate dehydrogenase OS=Shewanella frigidimarina (... [more]
MDH_SALG21.076e-2247.97Malate dehydrogenase OS=Salmonella gallinarum (str... [more]
MDHM_RAT1.076e-2245.08Malate dehydrogenase, mitochondrial OS=Rattus norv... [more]
MDH_SHEWM1.405e-2247.06Malate dehydrogenase OS=Shewanella woodyi (strain ... [more]
MDH_SHESW1.405e-2247.06Malate dehydrogenase OS=Shewanella sp. (strain W3-... [more]
MDH_SHEPW1.405e-2248.74Malate dehydrogenase OS=Shewanella piezotolerans (... [more]
MDH_SHEPC1.405e-2247.06Malate dehydrogenase OS=Shewanella putrefaciens (s... [more]
MDH_SHEON1.405e-2247.06Malate dehydrogenase OS=Shewanella oneidensis GN=m... [more]
MDH_SHELP1.405e-2247.90Malate dehydrogenase OS=Shewanella loihica (strain... [more]

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Properties
Property NameValue
Genbank descriptionC07010E10SK SaltLeaf1 Citrus clementina cDNA clone C07010E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300467 ID=CX300467; Name=CX300467; organism=Citrus clementina; type=EST; length=504bp
AGGTTAAGCCTCCTTGTAGCTTCACTCAAGAAGAAGCTGAATACCTGACG
AACCGCATACAAAATGGTGGAACAGAAGTTGTTGAGGCAAAAGCTGGGGC
TGGCTCTGCAACACTCTCAATGGCTTATGCAGCGGTTGAATTTGCGGATG
CATGCCTCCGTGGGCTGAGAGGAGATGCTGGTGTTGTGGAATGTGCATTC
GTAGCTTCTCAGGTGACGGAACTCCCTTTCTTCGCATCCAAGGTACGGCT
TGGTCGCCAAGGAGCTGAAGAAATCTTCCAACTTGGACCTTTAAATGAAT
ATGAGAGGATTGGCTTGGAGAAAGCGAAGAAAGAGTTAGCTGGAAGCATT
CAAAAGGGCATCTCCTTCAGCAAGAAATGAAGCGATGCCAAGAAAAATTC
CATCGGTTAAGTTTATTATCGCTCTTGAGTCACCGTCTCCTGTAATTAGC
AAGCCTTAATGTTGTACCCAGAAACAGTCGGAAAATGTATTTTTCCAACA
AGCG
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