CX300467

Overview
NameCX300467
Unique NameCX300467
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length504
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig838 contig Ccv1_Contig838:1..504. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_SALAR (Malate dehydrogenase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=mdh PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.130e-22
Identity = 59/123 (47.97%), Postives = 73/123 (59.35%), Query Frame = 3
Query:    9 PPCSFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 377
            P  SFT++EA  LT RIQN GTEVVEAKAG GSATLSM  AA  F  + +R L+G+ GVVECA+V        FF+  + LG+ G EE   +G L+ +E+  LE     L   I  G  F  K
Sbjct:  190 PGVSFTEQEAADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGETGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQRSLEGMLDTLKKDITLGEEFVTK 312          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_PHOLL (Malate dehydrogenase OS=Photorhabdus luminescens subsp. laumondii GN=mdh PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.130e-22
Identity = 58/120 (48.33%), Postives = 72/120 (60.00%), Query Frame = 3
Query:    9 PPCSFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISF 368
            P  +FT  E   LT RIQN GTEVVEAKAG GSATLSM  AA     + +RGL+G++ VVECA+V        FFA  VRLG+ G EE   +G L+++E+  LE     L   I+ G  F
Sbjct:  190 PGVNFTDGELAALTKRIQNAGTEVVEAKAGGGSATLSMGQAAARLGLSLVRGLQGESDVVECAYVEGDGKYARFFAQPVRLGKNGVEERLNIGELSDFEQKALEGMLDVLRKDIELGEKF 309          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_PECCP (Malate dehydrogenase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=mdh PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.130e-22
Identity = 58/122 (47.54%), Postives = 74/122 (60.66%), Query Frame = 3
Query:    9 PPCSFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK 374
            P  SF+++E   LT RIQN GTEVVEAKAG GSATLSM  AA  F  + +R L+G++GVVECA+V S      FFA  V LG+ G  E   +G L+ +E+  L      L   I+ G +F K
Sbjct:  190 PGISFSEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGESGVVECAYVESDGKHARFFAQPVLLGKDGVVERKDIGTLSAFEQNALSSMLDTLKQDIELGETFIK 311          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_PHOPR (Malate dehydrogenase OS=Photobacterium profundum GN=mdh PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 4.088e-22
Identity = 56/119 (47.06%), Postives = 70/119 (58.82%), Query Frame = 3
Query:   21 FTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 377
            F+ EE + LT RIQN GTEVVEAKAG GSATLSM  AA  F  + +R L+G+ G+VECA+V        FFA  V LG+ G EE+   G L+ +E+  L      L   I  G  F+ K
Sbjct:  194 FSDEEIKALTPRIQNAGTEVVEAKAGGGSATLSMGQAAYRFGLSLVRALQGEQGIVECAYVEGDGKHARFFAQPVLLGKDGVEEVIDYGKLSTFEQEALNNMLDTLTSDITLGEEFAAK 312          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_MORS2 (Malate dehydrogenase OS=Moritella sp. (strain 2D2) GN=mdh PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.088e-22
Identity = 55/116 (47.41%), Postives = 70/116 (60.34%), Query Frame = 3
Query:   21 FTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISF 368
            FT EE   LT RIQN GTEVVEAKAG GSATLSM +AA  F  + +R L+G+ G+VEC +V        FFA  V LG+ G EE+   G L+++E    +   +EL  +I  G  F
Sbjct:  194 FTAEEIATLTTRIQNAGTEVVEAKAGGGSATLSMGHAAARFGLSLVRALQGEKGIVECTYVDGGSEHATFFAQPVLLGKNGVEEVLAYGDLSDFETNARDAMLEELKANITLGEEF 309          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_HAEIN (Malate dehydrogenase OS=Haemophilus influenzae GN=mdh PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.088e-22
Identity = 56/116 (48.28%), Postives = 73/116 (62.93%), Query Frame = 3
Query:   21 FTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISF 368
            + ++E E LT RIQN GTEV+ AKAG GSATLSMA AA  FA + ++GL G+  VVEC +V        FF+  VRLG++G EEI  +GPL+ +E+  LE     L   I+ G  F
Sbjct:  194 WNEDEIEPLTKRIQNAGTEVLNAKAGGGSATLSMAQAAARFARSLVKGLSGET-VVECTYVEGDGKYARFFSQPVRLGKEGVEEILPIGPLSNFEQQALENMLPTLRADIELGEKF 308          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_VIBVY (Malate dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=mdh PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 5.338e-22
Identity = 57/118 (48.31%), Postives = 74/118 (62.71%), Query Frame = 3
Query:   21 FTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK 374
            F+ EE   LT RIQN GTEVVEAKAG GSATLSM  AA  F  A ++ L+G+  V+E A+V        FFA  V+LG++G EEI   G L+++E+  L+   + L G IQ G+ F K
Sbjct:  194 FSDEEIAALTKRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLALVKALQGEE-VIEYAYVEGNGEHASFFAQPVKLGKEGVEEILPYGELSDFEKAALDGMLETLNGDIQIGVDFVK 310          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_VIBMA (Malate dehydrogenase OS=Vibrio marinus GN=mdh PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.972e-22
Identity = 56/116 (48.28%), Postives = 69/116 (59.48%), Query Frame = 3
Query:   21 FTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISF 368
            FT EE   LT RIQN GTEVVEAKAG GSATLSM  AA  F  + +R L+G+ G+VEC +V        FFA  V LG+ G EE+   G L+E+E    +   +EL  +I  G  F
Sbjct:  194 FTAEEIATLTPRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEEGIVECTYVDGGSEHATFFAQPVLLGKNGVEEVLAYGELSEFETNARDAMLEELKANITLGEEF 309          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_SHESH (Malate dehydrogenase OS=Shewanella sediminis (strain HAW-EB3) GN=mdh PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.972e-22
Identity = 54/119 (45.38%), Postives = 70/119 (58.82%), Query Frame = 3
Query:   18 SFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK 374
            SF+ EE   LT RIQN GTEVVEAKAG GSATLSM  AA  F  + +RGL+G+  V+ECA+V        FFA  + LG+ G E +   G ++E+E    +     L   I+ G+ F K
Sbjct:  193 SFSDEEVAALTTRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLVRGLQGEENVIECAYVDGGSEHADFFAQPILLGKNGVESVLAYGEVSEFEANARDAMLDTLKADIKLGVEFVK 311          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_MORS5 (Malate dehydrogenase OS=Moritella sp. (strain 5710) GN=mdh PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.972e-22
Identity = 56/116 (48.28%), Postives = 69/116 (59.48%), Query Frame = 3
Query:   21 FTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISF 368
            FT EE   LT RIQN GTEVVEAKAG GSATLSM  AA  F  + +R L+G+ G+VEC +V        FFA  V LG+ G EE+   G L+E+E    +   +EL  +I  G  F
Sbjct:  194 FTAEEVVALTARIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEKGIVECTYVDGGSEHATFFAQPVLLGKNGVEEVLAYGELSEFETNARDAMLEELKANITLGEEF 309          
The following BLAST results are available for this feature:
BLAST of CX300467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
MDH_SALAR3.130e-2247.97Malate dehydrogenase OS=Salmonella arizonae (strai... [more]
MDH_PHOLL3.130e-2248.33Malate dehydrogenase OS=Photorhabdus luminescens s... [more]
MDH_PECCP3.130e-2247.54Malate dehydrogenase OS=Pectobacterium carotovorum... [more]
MDH_PHOPR4.088e-2247.06Malate dehydrogenase OS=Photobacterium profundum G... [more]
MDH_MORS24.088e-2247.41Malate dehydrogenase OS=Moritella sp. (strain 2D2)... [more]
MDH_HAEIN4.088e-2248.28Malate dehydrogenase OS=Haemophilus influenzae GN=... [more]
MDH_VIBVY5.338e-2248.31Malate dehydrogenase OS=Vibrio vulnificus (strain ... [more]
MDH_VIBMA6.972e-2248.28Malate dehydrogenase OS=Vibrio marinus GN=mdh PE=3... [more]
MDH_SHESH6.972e-2245.38Malate dehydrogenase OS=Shewanella sediminis (stra... [more]
MDH_MORS56.972e-2248.28Malate dehydrogenase OS=Moritella sp. (strain 5710... [more]

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Properties
Property NameValue
Genbank descriptionC07010E10SK SaltLeaf1 Citrus clementina cDNA clone C07010E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300467 ID=CX300467; Name=CX300467; organism=Citrus clementina; type=EST; length=504bp
AGGTTAAGCCTCCTTGTAGCTTCACTCAAGAAGAAGCTGAATACCTGACG
AACCGCATACAAAATGGTGGAACAGAAGTTGTTGAGGCAAAAGCTGGGGC
TGGCTCTGCAACACTCTCAATGGCTTATGCAGCGGTTGAATTTGCGGATG
CATGCCTCCGTGGGCTGAGAGGAGATGCTGGTGTTGTGGAATGTGCATTC
GTAGCTTCTCAGGTGACGGAACTCCCTTTCTTCGCATCCAAGGTACGGCT
TGGTCGCCAAGGAGCTGAAGAAATCTTCCAACTTGGACCTTTAAATGAAT
ATGAGAGGATTGGCTTGGAGAAAGCGAAGAAAGAGTTAGCTGGAAGCATT
CAAAAGGGCATCTCCTTCAGCAAGAAATGAAGCGATGCCAAGAAAAATTC
CATCGGTTAAGTTTATTATCGCTCTTGAGTCACCGTCTCCTGTAATTAGC
AAGCCTTAATGTTGTACCCAGAAACAGTCGGAAAATGTATTTTTCCAACA
AGCG
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