CX300467

Overview
NameCX300467
Unique NameCX300467
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length504
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig838 contig Ccv1_Contig838:1..504. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_MORJA (Malate dehydrogenase OS=Moritella japonica GN=mdh PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.972e-22
Identity = 56/116 (48.28%), Postives = 69/116 (59.48%), Query Frame = 3
Query:   21 FTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISF 368
            FT EE   LT RIQN GTEVVEAKAG GSATLSM  AA  F  + +R L+G+ G+VEC +V        FFA  V LG+ G EE+   G L+E+E    +   +EL  +I  G  F
Sbjct:  194 FTAEEIATLTPRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEEGIVECTYVDGGSEHATFFAQPVLLGKNGVEEVLAYGELSEFEANARDAMLEELKANITLGEEF 309          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_HAEI8 (Malate dehydrogenase OS=Haemophilus influenzae (strain 86-028NP) GN=mdh PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.972e-22
Identity = 56/116 (48.28%), Postives = 72/116 (62.07%), Query Frame = 3
Query:   21 FTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISF 368
            + ++E E L  RIQN GTEVV AKAG GSATLSMA AA  FA + ++GL G+  VVEC +V        FF+  VRLG++G EEI  +GPL+ +E+  LE     L   I+ G  F
Sbjct:  194 WNEDEIEPLAKRIQNAGTEVVNAKAGGGSATLSMAQAAARFARSLVKGLSGET-VVECTYVEGDGKYARFFSQPVRLGKEGVEEILPIGPLSNFEQQALENMLPTLRADIELGEKF 308          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_ECOSM (Malate dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.972e-22
Identity = 58/123 (47.15%), Postives = 72/123 (58.54%), Query Frame = 3
Query:    9 PPCSFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 377
            P  SFT++E   LT RIQN GTEVVEAKAG GSATLSM  AA  F  + +R L+G+ GVVECA+V        FF+  + LG+ G EE   +G L+ +E+  LE     L   I  G  F  K
Sbjct:  190 PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEKNALEGMLDTLKKDIALGEEFVNK 312          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_ECOLU (Malate dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.972e-22
Identity = 58/123 (47.15%), Postives = 72/123 (58.54%), Query Frame = 3
Query:    9 PPCSFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 377
            P  SFT++E   LT RIQN GTEVVEAKAG GSATLSM  AA  F  + +R L+G+ GVVECA+V        FF+  + LG+ G EE   +G L+ +E+  LE     L   I  G  F  K
Sbjct:  190 PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEKNALEGMLDTLKKDIALGEEFVNK 312          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_ECO8A (Malate dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=mdh PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.972e-22
Identity = 58/123 (47.15%), Postives = 72/123 (58.54%), Query Frame = 3
Query:    9 PPCSFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 377
            P  SFT++E   LT RIQN GTEVVEAKAG GSATLSM  AA  F  + +R L+G+ GVVECA+V        FF+  + LG+ G EE   +G L+ +E+  LE     L   I  G  F  K
Sbjct:  190 PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQSALEGMLDTLKKDIALGEEFVNK 312          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_ECO7I (Malate dehydrogenase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.972e-22
Identity = 58/123 (47.15%), Postives = 72/123 (58.54%), Query Frame = 3
Query:    9 PPCSFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 377
            P  SFT++E   LT RIQN GTEVVEAKAG GSATLSM  AA  F  + +R L+G+ GVVECA+V        FF+  + LG+ G EE   +G L+ +E+  LE     L   I  G  F  K
Sbjct:  190 PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEKNALEGMLDTLKKDIALGEEFVNK 312          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_ECO55 (Malate dehydrogenase OS=Escherichia coli (strain 55989 / EAEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.972e-22
Identity = 58/123 (47.15%), Postives = 72/123 (58.54%), Query Frame = 3
Query:    9 PPCSFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 377
            P  SFT++E   LT RIQN GTEVVEAKAG GSATLSM  AA  F  + +R L+G+ GVVECA+V        FF+  + LG+ G EE   +G L+ +E+  LE     L   I  G  F  K
Sbjct:  190 PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQSALEGMLDTLKKDIALGEEFVNK 312          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_SHISS (Malate dehydrogenase OS=Shigella sonnei (strain Ss046) GN=mdh PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 9.106e-22
Identity = 58/123 (47.15%), Postives = 72/123 (58.54%), Query Frame = 3
Query:    9 PPCSFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 377
            P  SFT++E   LT RIQN GTEVVEAKAG GSATLSM  AA  F  + +R L+G+ GVVECA+V        FF+  + LG+ G EE   +G L+ +E+  LE     L   I  G  F  K
Sbjct:  190 PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_SHIFL (Malate dehydrogenase OS=Shigella flexneri GN=mdh PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 9.106e-22
Identity = 58/123 (47.15%), Postives = 72/123 (58.54%), Query Frame = 3
Query:    9 PPCSFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 377
            P  SFT++E   LT RIQN GTEVVEAKAG GSATLSM  AA  F  + +R L+G+ GVVECA+V        FF+  + LG+ G EE   +G L+ +E+  LE     L   I  G  F  K
Sbjct:  190 PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGKEFVNK 312          
BLAST of CX300467 vs. ExPASy Swiss-Prot
Match: MDH_SHIF8 (Malate dehydrogenase OS=Shigella flexneri serotype 5b (strain 8401) GN=mdh PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 9.106e-22
Identity = 58/123 (47.15%), Postives = 72/123 (58.54%), Query Frame = 3
Query:    9 PPCSFTQEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 377
            P  SFT++E   LT RIQN GTEVVEAKAG GSATLSM  AA  F  + +R L+G+ GVVECA+V        FF+  + LG+ G EE   +G L+ +E+  LE     L   I  G  F  K
Sbjct:  190 PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGKEFVNK 312          
The following BLAST results are available for this feature:
BLAST of CX300467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
MDH_MORJA6.972e-2248.28Malate dehydrogenase OS=Moritella japonica GN=mdh ... [more]
MDH_HAEI86.972e-2248.28Malate dehydrogenase OS=Haemophilus influenzae (st... [more]
MDH_ECOSM6.972e-2247.15Malate dehydrogenase OS=Escherichia coli (strain S... [more]
MDH_ECOLU6.972e-2247.15Malate dehydrogenase OS=Escherichia coli O17:K52:H... [more]
MDH_ECO8A6.972e-2247.15Malate dehydrogenase OS=Escherichia coli O8 (strai... [more]
MDH_ECO7I6.972e-2247.15Malate dehydrogenase OS=Escherichia coli O7:K1 (st... [more]
MDH_ECO556.972e-2247.15Malate dehydrogenase OS=Escherichia coli (strain 5... [more]
MDH_SHISS9.106e-2247.15Malate dehydrogenase OS=Shigella sonnei (strain Ss... [more]
MDH_SHIFL9.106e-2247.15Malate dehydrogenase OS=Shigella flexneri GN=mdh P... [more]
MDH_SHIF89.106e-2247.15Malate dehydrogenase OS=Shigella flexneri serotype... [more]

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Properties
Property NameValue
Genbank descriptionC07010E10SK SaltLeaf1 Citrus clementina cDNA clone C07010E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300467 ID=CX300467; Name=CX300467; organism=Citrus clementina; type=EST; length=504bp
AGGTTAAGCCTCCTTGTAGCTTCACTCAAGAAGAAGCTGAATACCTGACG
AACCGCATACAAAATGGTGGAACAGAAGTTGTTGAGGCAAAAGCTGGGGC
TGGCTCTGCAACACTCTCAATGGCTTATGCAGCGGTTGAATTTGCGGATG
CATGCCTCCGTGGGCTGAGAGGAGATGCTGGTGTTGTGGAATGTGCATTC
GTAGCTTCTCAGGTGACGGAACTCCCTTTCTTCGCATCCAAGGTACGGCT
TGGTCGCCAAGGAGCTGAAGAAATCTTCCAACTTGGACCTTTAAATGAAT
ATGAGAGGATTGGCTTGGAGAAAGCGAAGAAAGAGTTAGCTGGAAGCATT
CAAAAGGGCATCTCCTTCAGCAAGAAATGAAGCGATGCCAAGAAAAATTC
CATCGGTTAAGTTTATTATCGCTCTTGAGTCACCGTCTCCTGTAATTAGC
AAGCCTTAATGTTGTACCCAGAAACAGTCGGAAAATGTATTTTTCCAACA
AGCG
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