CX300471

Overview
NameCX300471
Unique NameCX300471
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length524
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300471 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 5.072e-58
Identity = 107/142 (75.35%), Postives = 119/142 (83.80%), Query Frame = 1
Query:    1 IRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 426
            IRDGRMEKFYWAPTREDRIGVC GIFR DNV  +D+VK+VD FPGQSIDFFGALRARVYDDEVRKW            L+NS +  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYL EAALG+AN DAI +G+F+
Sbjct:  299 IRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440          
BLAST of CX300471 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 8.652e-58
Identity = 106/141 (75.18%), Postives = 119/141 (84.40%), Query Frame = 1
Query:    1 IRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 423
            IRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++ ++K+VDTFPGQSIDFFGALRARVYDDEVRKW            L+NS +  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAALG+AN DAI +GNF
Sbjct:  299 IRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439          
BLAST of CX300471 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 3.288e-57
Identity = 107/142 (75.35%), Postives = 120/142 (84.51%), Query Frame = 1
Query:    1 IRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 426
            IRDGRMEKFYWAPTREDRIGVCKGIFR D V + DIV+LVD  PGQSIDFFGALRARVYDDEVRKW          K LVNSKE  PTF+QP+MT++KLL Y +M+VQEQENVKRVQLAD+YL+EAALG ANEDAI+SG+F+
Sbjct:  299 IRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440          
BLAST of CX300471 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 5.608e-57
Identity = 104/139 (74.82%), Postives = 119/139 (85.61%), Query Frame = 1
Query:    1 IRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSG 417
            IRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++ +VK+VD+FPGQSIDFFGALRARVYDDEVRKW          + L+NS++  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAALG+AN DAI +G
Sbjct:  294 IRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432          
BLAST of CX300471 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 6.215e-48
Identity = 90/118 (76.27%), Postives = 101/118 (85.59%), Query Frame = 1
Query:    1 IRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQL 354
            IRDGRM+KFYWAPTREDRIG+C GIFR D V  +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW          ++LVNSKE+ PTF+QP+MT+EKLLEYGNM+V EQENVKRV+L
Sbjct:  292 IRDGRMDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409          
BLAST of CX300471 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 8.419e-37
Identity = 77/128 (60.16%), Postives = 91/128 (71.09%), Query Frame = 1
Query:    1 IRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAAL 384
            IRDGRMEK+YW PTREDRIGVC GIF+ DNV   ++  LVDTFPGQSIDFFGALRARVYDD VR+W          + LVN+++      +  M +  L++YG  +V EQENVKRVQLAD YLS A L
Sbjct:  268 IRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQSIDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQKV-AMPKVSMDLNVLIKYGKSLVDEQENVKRVQLADAYLSGAEL 394          
BLAST of CX300471 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.880e-28
Identity = 58/122 (47.54%), Postives = 82/122 (67.21%), Query Frame = 1
Query:    1 IRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 366
            IRDGRMEKFYW P R+D++G+  GIF  D ++  +I +LVDTFP QSIDFF ALR+R+YD ++R +            +VNS EA P F++P  ++  L+E GN+++ EQ+ V   QL D+Y
Sbjct:  168 IRDGRMEKFYWEPNRDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFERISLRVVNSLEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEY 289          
BLAST of CX300471 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.455e-28
Identity = 56/122 (45.90%), Postives = 81/122 (66.39%), Query Frame = 1
Query:    1 IRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 366
            IRDGRMEKFYW P R++++G+  GIF  D ++  D+ KLVD+FP QSIDFF ALR+R+YD+++R +            +VNS E  P F++P  T+  L+E  N +V EQ+ ++  QL D+Y
Sbjct:  168 IRDGRMEKFYWEPHRDEKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVSLRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY 289          
The following BLAST results are available for this feature:
BLAST of CX300471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RCA1_TOBAC5.072e-5875.35Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC8.652e-5875.18Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU3.288e-5775.35Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN5.608e-5774.82Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA6.215e-4876.27Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE8.419e-3760.16Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP1.880e-2847.54Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC2.455e-2845.90Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionC07010F02SK SaltLeaf1 Citrus clementina cDNA clone C07010F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300471 ID=CX300471; Name=CX300471; organism=Citrus clementina; type=EST; length=524bp
ATCCGTGATGGTCGTATGGAGAAATTCTACTGGGCACCTACAAGGGAGGA
CCGTATTGGTGTGTGCAAGGGTATCTTCAGGAATGACAATGTGGCTGATG
ACGACATTGTCAAGCTTGTCGACACCTTCCCCGGCCAATCCATTGATTTC
TTTGGAGCCCTGAGGGCCAGAGTCTATGATGATGAGGTGAGGAAGTGGAT
CTCTGGTGTTGGTGTTGGAAGCATTGGCAAGAGCCTTGTGAACTCAAAGG
AAGCAGCCCCAACATTCGAGCAACCAAGGATGACAATGGAGAAGCTGCTC
GAGTACGGAAACATGATTGTGCAAGAGCAAGAGAATGTGAAGAGAGTTCA
GTTGGCTGACAAGTATTTGAGTGAGGCCGCTCTTGGTGAAGCTAATGAAG
ATGCTATTCAGAGTGGAAATTTCTATGGCAAAGCAGCCCAGCAAATGAAT
GTTCCAGTTCCTGAAGGATGTACTGATCCTACTGCAGAAAACTTTGATCC
AACTGCAAGAAGTGATGATGGAAG
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