CX300472

Overview
NameCX300472
Unique NameCX300472
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS16_MOUSE (40S ribosomal protein S16 OS=Mus musculus GN=Rps16 PE=2 SV=4)

HSP 1 Score: 225.328 bits (573), Expect = 1.396e-58
Identity = 106/139 (76.26%), Postives = 124/139 (89.21%), Query Frame = 1
Query:   82 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498
            +SVQ FGRKKTA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RF GVD+R+RVKGGGH +QIYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR
Sbjct:    8 QSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146          
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS16_LUPPO (40S ribosomal protein S16 OS=Lupinus polyphyllus GN=RPS16 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.396e-58
Identity = 120/147 (81.63%), Postives = 124/147 (84.35%), Query Frame = 1
Query:   58 MATAAPKTESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498
            MAT     +S     RK  + + T      GLIKING PIELVEPEILRFKAFEPILLLG+ RF GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct:    1 MATDQHSNKSNVSAARKPLSPSPT--ASAAGLIKINGSPIELVEPEILRFKAFEPILLLGKSRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 145          
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS16_HUMAN (40S ribosomal protein S16 OS=Homo sapiens GN=RPS16 PE=1 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 1.396e-58
Identity = 106/139 (76.26%), Postives = 124/139 (89.21%), Query Frame = 1
Query:   82 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498
            +SVQ FGRKKTA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RF GVD+R+RVKGGGH +QIYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR
Sbjct:    8 QSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146          
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS16_BOVIN (40S ribosomal protein S16 OS=Bos taurus GN=RPS16 PE=2 SV=3)

HSP 1 Score: 225.328 bits (573), Expect = 1.396e-58
Identity = 106/139 (76.26%), Postives = 124/139 (89.21%), Query Frame = 1
Query:   82 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498
            +SVQ FGRKKTA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RF GVD+R+RVKGGGH +QIYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR
Sbjct:    8 QSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146          
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS16_ICTPU (40S ribosomal protein S16 OS=Ictalurus punctatus GN=rps16 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 5.306e-58
Identity = 105/139 (75.54%), Postives = 123/139 (88.49%), Query Frame = 1
Query:   82 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498
            +SVQ FGRKKTA AV +CKRG GLIK+NG P+E +EP  L++K  EP+LLLG+ RF GVD+R+RVKGGGH +Q+YAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR
Sbjct:    8 QSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLETIEPATLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQVYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146          
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS16_DROME (40S ribosomal protein S16 OS=Drosophila melanogaster GN=RpS16 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 6.930e-58
Identity = 104/139 (74.82%), Postives = 124/139 (89.21%), Query Frame = 1
Query:   82 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498
            ++VQ FGRKKTA AV YCKRG GL+K+NG P+E +EP++L++K  EP+LLLG+ +F GVD+R+RV GGGH +QIYAIRQ+I+KALVAFYQKYVDE SKKEIKDILV+YDRTLLV DPRRCEPKKFGG GARAR+QKSYR
Sbjct:   10 QAVQVFGRKKTATAVAYCKRGNGLLKVNGRPLEQIEPKVLQYKLQEPLLLLGKEKFAGVDIRVRVSGGGHVAQIYAIRQAISKALVAFYQKYVDEASKKEIKDILVQYDRTLLVGDPRRCEPKKFGGPGARARYQKSYR 148          
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS16_SPOFR (40S ribosomal protein S16 OS=Spodoptera frugiperda GN=RpS16 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.182e-57
Identity = 102/139 (73.38%), Postives = 126/139 (90.65%), Query Frame = 1
Query:   82 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498
            ++VQ FGRKKTA AV YCKRG G++++NG P++LVEP +L++K  EPILLLG+ +F+GVD+R+ VKGGGH +Q+YAIRQ+I+KAL+AFYQKYVDE SKKEIKDILV+YDR+LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct:   13 QAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 151          
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS16_HETFO (40S ribosomal protein S16 OS=Heteropneustes fossilis GN=rps16 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.182e-57
Identity = 104/139 (74.82%), Postives = 123/139 (88.49%), Query Frame = 1
Query:   82 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498
            +SVQ FGRKKTA AV +CKRG GLIK+NG P+E +EP  L++K  EP+LLLG+ RF GVD+R+RVKGGGH +Q+YAIRQ+I+KALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR
Sbjct:    8 QSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLETIEPATLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQVYAIRQAISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146          
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS16_AEDAE (40S ribosomal protein S16 OS=Aedes aegypti GN=RpS16 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 2.229e-56
Identity = 100/138 (72.46%), Postives = 124/138 (89.86%), Query Frame = 1
Query:   85 SVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498
            +VQ FGRKKTA AV YCKRG+GL+++NG P++ +EP++L++K  EP+LLLG+ +F GVD+RIRV GGGH +QIYAIRQ+I+KALV+FYQKYVDE S+KE+KDIL +YDRTLLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct:   11 AVQVFGRKKTATAVAYCKRGKGLLRVNGRPLDQIEPKVLQYKLQEPLLLLGKEKFAGVDIRIRVSGGGHVAQIYAIRQAISKALVSFYQKYVDEASRKELKDILTQYDRTLLVADPRRCEPKKFGGPGARARYQKSYR 148          
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS16_SCHPO (40S ribosomal protein S16 OS=Schizosaccharomyces pombe GN=rps16a PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 8.766e-53
Identity = 97/139 (69.78%), Postives = 116/139 (83.45%), Query Frame = 1
Query:   82 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498
            +SVQCFG+K  A AV +CK G+GLIK+NG P+ LV+PEILR K +EPIL+ G  +F GVD+R+RV GGGH SQIYAIRQ+I+KA+VA+YQK+VDE SK E+K  L+ YDRTLLVADPRR EPKKFGG GARAR QKSYR
Sbjct:    2 QSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140          
The following BLAST results are available for this feature:
BLAST of CX300472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
RS16_MOUSE1.396e-5876.2640S ribosomal protein S16 OS=Mus musculus GN=Rps16... [more]
RS16_LUPPO1.396e-5881.6340S ribosomal protein S16 OS=Lupinus polyphyllus G... [more]
RS16_HUMAN1.396e-5876.2640S ribosomal protein S16 OS=Homo sapiens GN=RPS16... [more]
RS16_BOVIN1.396e-5876.2640S ribosomal protein S16 OS=Bos taurus GN=RPS16 P... [more]
RS16_ICTPU5.306e-5875.5440S ribosomal protein S16 OS=Ictalurus punctatus G... [more]
RS16_DROME6.930e-5874.8240S ribosomal protein S16 OS=Drosophila melanogast... [more]
RS16_SPOFR1.182e-5773.3840S ribosomal protein S16 OS=Spodoptera frugiperda... [more]
RS16_HETFO1.182e-5774.8240S ribosomal protein S16 OS=Heteropneustes fossil... [more]
RS16_AEDAE2.229e-5672.4640S ribosomal protein S16 OS=Aedes aegypti GN=RpS1... [more]
RS16_SCHPO8.766e-5369.7840S ribosomal protein S16 OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionC07010F03SK SaltLeaf1 Citrus clementina cDNA clone C07010F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300472 ID=CX300472; Name=CX300472; organism=Citrus clementina; type=EST; length=532bp
ACTTTCAAGCACCAAGAGCTCACACAACACAAACACACACTAAGCACTGA
TCCCAACATGGCTACTGCTGCTCCTAAAACCGAGTCCGTGCAATGCTTCG
GCCGCAAGAAGACGGCGGTGGCAGTAACCTACTGCAAGCGCGGCCGCGGC
TTGATCAAGATCAACGGCTGCCCAATCGAGCTTGTGGAGCCAGAGATCCT
GCGTTTCAAGGCCTTCGAGCCGATCCTATTGCTCGGACGACACCGTTTCA
ACGGAGTAGACATGAGGATCCGCGTCAAGGGCGGAGGCCACACGTCTCAG
ATCTACGCTATACGCCAGAGCATCGCGAAGGCCTTGGTCGCGTTTTATCA
GAAGTACGTGGACGAACAGAGCAAGAAGGAGATAAAAGACATTCTGGTTA
GGTACGATAGGACTTTGCTTGTGGCTGATCCTAGACGCTGTGAGCCTAAG
AAGTTCGGAGGACGCGGCGCCAGGGCTAGGTTCCAGAAATCTTACCGTTA
AAGAAACAGAGGTTTATGTTGCGTTTTTATTA
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