CX300472
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS16_MOUSE (40S ribosomal protein S16 OS=Mus musculus GN=Rps16 PE=2 SV=4) HSP 1 Score: 225.328 bits (573), Expect = 1.396e-58 Identity = 106/139 (76.26%), Postives = 124/139 (89.21%), Query Frame = 1 Query: 82 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498 +SVQ FGRKKTA AV +CKRG GLIK+NG P+E++EP L++K EP+LLLG+ RF GVD+R+RVKGGGH +QIYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR Sbjct: 8 QSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS16_LUPPO (40S ribosomal protein S16 OS=Lupinus polyphyllus GN=RPS16 PE=2 SV=1) HSP 1 Score: 225.328 bits (573), Expect = 1.396e-58 Identity = 120/147 (81.63%), Postives = 124/147 (84.35%), Query Frame = 1 Query: 58 MATAAPKTESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498 MAT +S RK + + T GLIKING PIELVEPEILRFKAFEPILLLG+ RF GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR Sbjct: 1 MATDQHSNKSNVSAARKPLSPSPT--ASAAGLIKINGSPIELVEPEILRFKAFEPILLLGKSRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 145
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS16_HUMAN (40S ribosomal protein S16 OS=Homo sapiens GN=RPS16 PE=1 SV=2) HSP 1 Score: 225.328 bits (573), Expect = 1.396e-58 Identity = 106/139 (76.26%), Postives = 124/139 (89.21%), Query Frame = 1 Query: 82 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498 +SVQ FGRKKTA AV +CKRG GLIK+NG P+E++EP L++K EP+LLLG+ RF GVD+R+RVKGGGH +QIYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR Sbjct: 8 QSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS16_BOVIN (40S ribosomal protein S16 OS=Bos taurus GN=RPS16 PE=2 SV=3) HSP 1 Score: 225.328 bits (573), Expect = 1.396e-58 Identity = 106/139 (76.26%), Postives = 124/139 (89.21%), Query Frame = 1 Query: 82 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498 +SVQ FGRKKTA AV +CKRG GLIK+NG P+E++EP L++K EP+LLLG+ RF GVD+R+RVKGGGH +QIYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR Sbjct: 8 QSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS16_ICTPU (40S ribosomal protein S16 OS=Ictalurus punctatus GN=rps16 PE=2 SV=1) HSP 1 Score: 223.402 bits (568), Expect = 5.306e-58 Identity = 105/139 (75.54%), Postives = 123/139 (88.49%), Query Frame = 1 Query: 82 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498 +SVQ FGRKKTA AV +CKRG GLIK+NG P+E +EP L++K EP+LLLG+ RF GVD+R+RVKGGGH +Q+YAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR Sbjct: 8 QSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLETIEPATLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQVYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS16_DROME (40S ribosomal protein S16 OS=Drosophila melanogaster GN=RpS16 PE=2 SV=1) HSP 1 Score: 223.016 bits (567), Expect = 6.930e-58 Identity = 104/139 (74.82%), Postives = 124/139 (89.21%), Query Frame = 1 Query: 82 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498 ++VQ FGRKKTA AV YCKRG GL+K+NG P+E +EP++L++K EP+LLLG+ +F GVD+R+RV GGGH +QIYAIRQ+I+KALVAFYQKYVDE SKKEIKDILV+YDRTLLV DPRRCEPKKFGG GARAR+QKSYR Sbjct: 10 QAVQVFGRKKTATAVAYCKRGNGLLKVNGRPLEQIEPKVLQYKLQEPLLLLGKEKFAGVDIRVRVSGGGHVAQIYAIRQAISKALVAFYQKYVDEASKKEIKDILVQYDRTLLVGDPRRCEPKKFGGPGARARYQKSYR 148
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS16_SPOFR (40S ribosomal protein S16 OS=Spodoptera frugiperda GN=RpS16 PE=2 SV=1) HSP 1 Score: 222.246 bits (565), Expect = 1.182e-57 Identity = 102/139 (73.38%), Postives = 126/139 (90.65%), Query Frame = 1 Query: 82 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498 ++VQ FGRKKTA AV YCKRG G++++NG P++LVEP +L++K EPILLLG+ +F+GVD+R+ VKGGGH +Q+YAIRQ+I+KAL+AFYQKYVDE SKKEIKDILV+YDR+LLVADPRRCEPKKFGG GARAR+QKSYR Sbjct: 13 QAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 151
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS16_HETFO (40S ribosomal protein S16 OS=Heteropneustes fossilis GN=rps16 PE=2 SV=1) HSP 1 Score: 222.246 bits (565), Expect = 1.182e-57 Identity = 104/139 (74.82%), Postives = 123/139 (88.49%), Query Frame = 1 Query: 82 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498 +SVQ FGRKKTA AV +CKRG GLIK+NG P+E +EP L++K EP+LLLG+ RF GVD+R+RVKGGGH +Q+YAIRQ+I+KALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR Sbjct: 8 QSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLETIEPATLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQVYAIRQAISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS16_AEDAE (40S ribosomal protein S16 OS=Aedes aegypti GN=RpS16 PE=2 SV=1) HSP 1 Score: 218.009 bits (554), Expect = 2.229e-56 Identity = 100/138 (72.46%), Postives = 124/138 (89.86%), Query Frame = 1 Query: 85 SVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498 +VQ FGRKKTA AV YCKRG+GL+++NG P++ +EP++L++K EP+LLLG+ +F GVD+RIRV GGGH +QIYAIRQ+I+KALV+FYQKYVDE S+KE+KDIL +YDRTLLVADPRRCEPKKFGG GARAR+QKSYR Sbjct: 11 AVQVFGRKKTATAVAYCKRGKGLLRVNGRPLDQIEPKVLQYKLQEPLLLLGKEKFAGVDIRIRVSGGGHVAQIYAIRQAISKALVSFYQKYVDEASRKELKDILTQYDRTLLVADPRRCEPKKFGGPGARARYQKSYR 148
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS16_SCHPO (40S ribosomal protein S16 OS=Schizosaccharomyces pombe GN=rps16a PE=2 SV=1) HSP 1 Score: 206.068 bits (523), Expect = 8.766e-53 Identity = 97/139 (69.78%), Postives = 116/139 (83.45%), Query Frame = 1 Query: 82 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498 +SVQCFG+K A AV +CK G+GLIK+NG P+ LV+PEILR K +EPIL+ G +F GVD+R+RV GGGH SQIYAIRQ+I+KA+VA+YQK+VDE SK E+K L+ YDRTLLVADPRR EPKKFGG GARAR QKSYR Sbjct: 2 QSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140 The following BLAST results are available for this feature:
BLAST of CX300472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300472 ID=CX300472; Name=CX300472; organism=Citrus clementina; type=EST; length=532bpback to top |