CX300472

Overview
NameCX300472
Unique NameCX300472
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS16_CANAL (40S ribosomal protein S16 OS=Candida albicans GN=RPS16 PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 8.766e-53
Identity = 98/140 (70.00%), Postives = 117/140 (83.57%), Query Frame = 1
Query:   79 TESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498
            T+SVQ FG+KKTA AV + K G+GLIKING PI LV+PEILRFK +EP+ L+G  +F G+D+R++V GGGH SQ+YAIRQ+IAK LVA++QKYVDE SK E+K I   YD+TLLVAD RR EPKKFGGRGARARFQKSYR
Sbjct:    3 TQSVQTFGKKKTATAVAHVKAGKGLIKINGSPITLVQPEILRFKVYEPLTLVGLDKFQGIDIRVKVTGGGHVSQVYAIRQAIAKGLVAYHQKYVDEASKNELKKIFASYDKTLLVADSRRMEPKKFGGRGARARFQKSYR 142          
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS16_CAEEL (40S ribosomal protein S16 OS=Caenorhabditis elegans GN=rps-16 PE=1 SV=3)

HSP 1 Score: 204.527 bits (519), Expect = 2.551e-52
Identity = 96/139 (69.06%), Postives = 119/139 (85.61%), Query Frame = 1
Query:   82 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498
            +SVQ FGRKKTA AV +CK+G+GLIK+NG P+E +EP+ILR K  EP+LL+G+ RF  VD+RIRV GGGH +QIYA+RQ++AKALVA+Y KYVDEQSK+E+K+I   YD++LLVADPRR E KKFGG GARAR+QKSYR
Sbjct:    6 QSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDVDIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRRRESKKFGGPGARARYQKSYR 144          
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS16_YEAST (40S ribosomal protein S16 OS=Saccharomyces cerevisiae GN=RPS16A PE=1 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 1.653e-51
Identity = 95/138 (68.84%), Postives = 116/138 (84.06%), Query Frame = 1
Query:   85 SVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498
            SVQ FG+KK+A AV + K G+GLIK+NG PI LVEPEILRFK +EP+LL+G  +F+ +D+R+RV GGGH SQ+YAIRQ+IAK LVA++QKYVDEQSK E+K     YDRTLL+AD RR EPKKFGG+GAR+RFQKSYR
Sbjct:    6 SVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPEILRFKVYEPLLLVGLDKFSNIDIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQKYVDEQSKNELKKAFTSYDRTLLIADSRRPEPKKFGGKGARSRFQKSYR 143          
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS16_NEUCR (40S ribosomal protein S16 OS=Neurospora crassa GN=rps-16 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 2.820e-51
Identity = 93/140 (66.43%), Postives = 117/140 (83.57%), Query Frame = 1
Query:   79 TESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498
            T++VQ FG+KK A AV  C +G+GLIK+NG P++L  PEILR K +EPILLLG  +F  VD+R++V GGGH SQ+YA+RQ+IAKA+VA+Y KYVDE SK  +K  L+++DRTLLVADPRRCEPKKFGG+GAR+RFQKSYR
Sbjct:    3 TQAVQVFGKKKNATAVARCVQGKGLIKVNGVPLKLYAPEILRAKLYEPILLLGTDKFAEVDIRLKVSGGGHVSQVYAVRQAIAKAIVAYYAKYVDEHSKNTLKTALIQFDRTLLVADPRRCEPKKFGGKGARSRFQKSYR 142          
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS16_DEBHA (40S ribosomal protein S16 OS=Debaryomyces hansenii GN=RPS16 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 2.820e-51
Identity = 94/140 (67.14%), Postives = 115/140 (82.14%), Query Frame = 1
Query:   79 TESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498
            T SVQ FG+KKTA AV + K G+GLIK+NG PI LV+PEILRFK +EP+ L+G  +F  +D+R++V GGGH SQ+YAIRQ+IAK LVA++QK+VDE SK E+K +   YD+TLLVAD RR EPKKFGGRGARARFQKSYR
Sbjct:    3 TPSVQTFGKKKTATAVAHVKAGKGLIKVNGAPITLVQPEILRFKVYEPLTLVGLDKFQNIDIRVKVSGGGHVSQVYAIRQAIAKGLVAYHQKFVDEASKNELKKVFASYDKTLLVADSRRMEPKKFGGRGARARFQKSYR 142          
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS16_DICDI (40S ribosomal protein S16 OS=Dictyostelium discoideum GN=rps16 PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 4.810e-51
Identity = 92/147 (62.59%), Postives = 122/147 (82.99%), Query Frame = 1
Query:   58 MATAAPKTESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498
            M+  AP+   VQ  G+K+TAVAV Y   G+GLIK+NG P+E ++P+ L+ K +EP+L++G+  F+ VD+R+RV+GGG  +QIYAIRQ+IAK++VA++QKYVDE+SK EIK  ++ YDR+LLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct:    1 MSAVAPQKNVVQTHGKKRTAVAVAYATNGKGLIKVNGVPLEFIQPKNLKLKVYEPVLIVGKDVFSQVDIRVRVRGGGSVAQIYAIRQAIAKSIVAYHQKYVDEESKNEIKKKILDYDRSLLVADPRRCEPKKFGGRGARARFQKSYR 147          
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS16_CANGA (40S ribosomal protein S16 OS=Candida glabrata GN=RPS16 PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 4.810e-51
Identity = 95/138 (68.84%), Postives = 115/138 (83.33%), Query Frame = 1
Query:   85 SVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498
            SVQ FG+KK+A AV + K G+GLIK+NG PI LVEPEILRFK +EP+LL+G  +F  +D+R+RV GGGH SQ+YAIRQ+IAK LVA++QK+VDEQSK E+K     YDRTLL+AD RR EPKKFGG+GARARFQKSYR
Sbjct:    6 SVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPEILRFKVYEPLLLVGLDKFANIDIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQKFVDEQSKNELKKAFTSYDRTLLIADARRPEPKKFGGKGARARFQKSYR 143          
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS16_ASHGO (40S ribosomal protein S16 OS=Ashbya gossypii GN=RPS16 PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 4.810e-51
Identity = 95/138 (68.84%), Postives = 115/138 (83.33%), Query Frame = 1
Query:   85 SVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498
            SVQ FG+KK+A AV + K G+GLIK+NG PI LV+PEILRFK +EP+LL+G  +F  +D+R+RV GGGH SQ+YAIRQ+IAK LVA++QK+VDEQSK E+K     YDRTLL+AD RR EPKKFGGRGARARFQKSYR
Sbjct:    6 SVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVQPEILRFKVYEPLLLVGLDKFANIDIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQKFVDEQSKNELKKAFTSYDRTLLIADSRRPEPKKFGGRGARARFQKSYR 143          
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS16_KLULA (40S ribosomal protein S16 OS=Kluyveromyces lactis GN=RPS16 PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 2.387e-50
Identity = 93/138 (67.39%), Postives = 115/138 (83.33%), Query Frame = 1
Query:   85 SVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498
            SVQ FG+KK+A AV + K G+GLIK+NG PI LV+PEILRFK +EP+LL+G  +F  +D+R++V GGGH SQ+YAIRQ+IAK LVA++QK+VDEQSK E+K     YDRTLL+AD RR EPKKFGGRGAR+RFQKSYR
Sbjct:    6 SVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVQPEILRFKVYEPLLLVGLDKFANIDIRVKVTGGGHVSQVYAIRQAIAKGLVAYHQKFVDEQSKNELKKAFTSYDRTLLIADSRRPEPKKFGGRGARSRFQKSYR 143          
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS16_SACEX (40S ribosomal protein S16 OS=Saccharomyces exiguus GN=RPS16 PE=3 SV=3)

HSP 1 Score: 194.512 bits (493), Expect = 2.640e-49
Identity = 90/138 (65.22%), Postives = 114/138 (82.61%), Query Frame = 1
Query:   85 SVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498
            SVQ FG+KK+A AV + K G+GLIK+NG PI LV+PEILRFK +EP+LL+G  +F  +D+R+RV GGGH SQ+YAIRQ+IAK L+A++QK+VDEQSK E+K     YDRTLL+AD R  EPKKFGG+GAR+R+QKSYR
Sbjct:    6 SVQTFGKKKSATAVAHVKAGKGLIKVNGAPITLVQPEILRFKVYEPLLLVGLDKFTNIDIRVRVTGGGHVSQVYAIRQAIAKGLIAYHQKFVDEQSKNELKRAFTLYDRTLLIADSRMPEPKKFGGKGARSRYQKSYR 143          
The following BLAST results are available for this feature:
BLAST of CX300472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
RS16_CANAL8.766e-5370.0040S ribosomal protein S16 OS=Candida albicans GN=R... [more]
RS16_CAEEL2.551e-5269.0640S ribosomal protein S16 OS=Caenorhabditis elegan... [more]
RS16_YEAST1.653e-5168.8440S ribosomal protein S16 OS=Saccharomyces cerevis... [more]
RS16_NEUCR2.820e-5166.4340S ribosomal protein S16 OS=Neurospora crassa GN=... [more]
RS16_DEBHA2.820e-5167.1440S ribosomal protein S16 OS=Debaryomyces hansenii... [more]
RS16_DICDI4.810e-5162.5940S ribosomal protein S16 OS=Dictyostelium discoid... [more]
RS16_CANGA4.810e-5168.8440S ribosomal protein S16 OS=Candida glabrata GN=R... [more]
RS16_ASHGO4.810e-5168.8440S ribosomal protein S16 OS=Ashbya gossypii GN=RP... [more]
RS16_KLULA2.387e-5067.3940S ribosomal protein S16 OS=Kluyveromyces lactis ... [more]
RS16_SACEX2.640e-4965.2240S ribosomal protein S16 OS=Saccharomyces exiguus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07010F03SK SaltLeaf1 Citrus clementina cDNA clone C07010F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300472 ID=CX300472; Name=CX300472; organism=Citrus clementina; type=EST; length=532bp
ACTTTCAAGCACCAAGAGCTCACACAACACAAACACACACTAAGCACTGA
TCCCAACATGGCTACTGCTGCTCCTAAAACCGAGTCCGTGCAATGCTTCG
GCCGCAAGAAGACGGCGGTGGCAGTAACCTACTGCAAGCGCGGCCGCGGC
TTGATCAAGATCAACGGCTGCCCAATCGAGCTTGTGGAGCCAGAGATCCT
GCGTTTCAAGGCCTTCGAGCCGATCCTATTGCTCGGACGACACCGTTTCA
ACGGAGTAGACATGAGGATCCGCGTCAAGGGCGGAGGCCACACGTCTCAG
ATCTACGCTATACGCCAGAGCATCGCGAAGGCCTTGGTCGCGTTTTATCA
GAAGTACGTGGACGAACAGAGCAAGAAGGAGATAAAAGACATTCTGGTTA
GGTACGATAGGACTTTGCTTGTGGCTGATCCTAGACGCTGTGAGCCTAAG
AAGTTCGGAGGACGCGGCGCCAGGGCTAGGTTCCAGAAATCTTACCGTTA
AAGAAACAGAGGTTTATGTTGCGTTTTTATTA
back to top