CX300472
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS9_METJA (30S ribosomal protein S9P OS=Methanocaldococcus jannaschii GN=rps9p PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 3.249e-23 Identity = 61/135 (45.19%), Postives = 82/135 (60.74%), Query Frame = 1 Query: 100 GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 498 G++K A+A + G+G I+IN PIEL+EP+ R K EPILL G + +D+ + VKGGG Q+ A R +I KA+V F KE++D + YDRTLLV+D RR EP K +G RA+ QKSYR Sbjct: 9 GKRKRAIARAVAREGKGRIRINKIPIELIEPKYKRMKLMEPILLAGEEVISQMDIDVTVKGGGVMGQMDAARTAIGKAIVEF-------TGSKELRDKFLAYDRTLLVSDARRTEPHKPSRSTKGPRAKRQKSYR 136
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS9_DESK1 (30S ribosomal protein S9P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps9p PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 3.249e-23 Identity = 59/145 (40.69%), Postives = 87/145 (60.00%), Query Frame = 1 Query: 64 TAAPKTESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498 T + K + V G++KT++A K G G + IN P+E ++ E+ + K EP+LL+G VD+R+ V GGG+ SQ A+R +IA+ LV F+ + E+K + YDR +L DPR+ EPKK+G AR R+QKSYR Sbjct: 4 TLSDKIKIVVSSGKRKTSIARAVIKPGIGRVWINNVPVEFIQFELAKMKILEPLLLIG-DLAKTVDIRVNVHGGGYMSQAEAVRIAIARGLVEFF-------NSDEVKSLFKEYDRHMLSGDPRQTEPKKWGRYSARRRWQKSYR 140
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS9_METTP (30S ribosomal protein S9P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps9p PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 4.243e-23 Identity = 56/137 (40.88%), Postives = 83/137 (60.58%), Query Frame = 1 Query: 88 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498 V G+KKTA+A K G+G I+IN P+E++EP + R K EP+++ F+ VD+ + V GGG Q A+R ++A+ ++ + +K+ YDR LLV+D R+ E KKFGG GARA++QKSYR Sbjct: 4 VNSSGKKKTAIARATFKEGKGRIRINNVPLEIIEPALARMKMMEPVIMAAE-AFSSVDVDVSVMGGGVMGQADAVRTALARGILEW-------TGDAALKEAYAEYDRNLLVSDHRQKEKKKFGGLGARAKYQKSYR 132
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS9_PYRKO (30S ribosomal protein S9P OS=Pyrococcus kodakaraensis GN=rps9p PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 7.238e-23 Identity = 58/139 (41.73%), Postives = 86/139 (61.87%), Query Frame = 1 Query: 88 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 498 +Q G++KTAVA + G+G ++IN P+E++EPEI RF EP++L G + VD+ ++V+GGG Q A R +IA+ALV + + +K+ ++YDRT+LV D RR EP K +G RA+ QKSYR Sbjct: 4 IQTAGKRKTAVARATIREGKGRVRINHKPVEIIEPEIARFTIMEPLILAGEEIVSRVDIDVKVEGGGFMGQAEAARVAIARALVEW-------TNDMNLKEKFMKYDRTMLVGDSRRTEPHKPNRSTKGPRAKRQKSYR 135
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS9_AERPE (30S ribosomal protein S9P OS=Aeropyrum pernix GN=rps9p PE=3 SV=2) HSP 1 Score: 105.531 bits (262), Expect = 1.613e-22 Identity = 57/142 (40.14%), Postives = 89/142 (62.68%), Query Frame = 1 Query: 100 GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQ---------KYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498 G++K A+A + GRG + ING P+E+ E+ R K EP+L+ G + VD+R+RV+GGG Q A+R +IA+ LV F++ + +D+ S ++++ + +DRT+LV DPRR EP+K+ AR R+QKSYR Sbjct: 11 GKRKRAIARAVIRPGRGRVWINGVPLEIYPIEMARIKMMEPLLIAGEGVRSLVDIRVRVEGGGVMGQADAVRMAIARGLVEFFRCEESDDELCRMMDKIS-RDLRTAFLEHDRTMLVGDPRRTEPEKYMRYSARRRWQKSYR 151
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS9_METM7 (30S ribosomal protein S9P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps9p PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 2.106e-22 Identity = 60/139 (43.17%), Postives = 85/139 (61.15%), Query Frame = 1 Query: 88 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 498 V G+++TA+A K G G I+IN P+EL+EP+ ++ K EP++L G + +D+ I VKGGG SQ+ A R ++ KA+V F K E+K+ + YDRTLLV+D RR EP K +G RA+ QKSYR Sbjct: 4 VHTVGKRRTAIARATAKEGSGKIRINKKPLELMEPKYIKMKLMEPVILAG-EALSNIDVDIDVKGGGIVSQMDATRTALGKAIVEF-------TGKMELKEKFLSYDRTLLVSDARRTEPHKPSKSSKGPRAKRQKSYR 134
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS9_METM5 (30S ribosomal protein S9P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps9p PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 2.751e-22 Identity = 60/139 (43.17%), Postives = 85/139 (61.15%), Query Frame = 1 Query: 88 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 498 V G+++TA+A K G G I+IN P+EL+EP+ ++ K EP++L G + +D+ I VKGGG SQ+ A R ++ KA+V F K E+K+ + YDRTLLV+D RR EP K +G RA+ QKSYR Sbjct: 4 VHTVGKRRTAIARATAKEGSGKIRINKKPLELMEPKYIKMKLMEPVILAG-EALSDIDVDIDVKGGGIVSQMDATRTALGKAIVEF-------TGKMELKEKFLSYDRTLLVSDARRTEPHKPSKSSKGPRAKRQKSYR 134
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS9_METVS (30S ribosomal protein S9P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps9p PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 4.692e-22 Identity = 58/139 (41.73%), Postives = 84/139 (60.43%), Query Frame = 1 Query: 88 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 498 V G+++TA+A G G I+IN P+EL+EP+ ++ K EP++L G +D+ + VKGGG SQ+ A R ++ KA++ F K E+K++ + YDRTLLV+D RR EP K +G RAR QKSYR Sbjct: 4 VHTVGKRRTAIARATATEGSGKIRINKKPLELMEPKYIKMKLMEPVILAG-EILGSIDVDVDVKGGGTVSQMDAARTALGKAIIEF-------TGKMELKEMFLSYDRTLLVSDARRTEPHKPSKSSKGPRARRQKSYR 134
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS9_METMP (30S ribosomal protein S9P OS=Methanococcus maripaludis GN=rps9p PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 4.692e-22 Identity = 59/139 (42.45%), Postives = 85/139 (61.15%), Query Frame = 1 Query: 88 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKSYR 498 V G+++TA+A K G G I+IN P+EL+EP+ ++ K EP++L G + +D+ I VKGGG SQ+ A R ++ KA+V F K ++K+ + YDRTLLV+D RR EP K +G RA+ QKSYR Sbjct: 4 VHTVGKRRTAIARATAKEGSGKIRINKKPLELMEPKYIKMKLMEPVILAG-EALSNIDVDIDVKGGGIVSQMDATRTALGKAIVEF-------TGKMDLKEKFLSYDRTLLVSDARRTEPHKPSKSSKGPRAKRQKSYR 134
BLAST of CX300472 vs. ExPASy Swiss-Prot
Match: RS9_METAC (30S ribosomal protein S9P OS=Methanosarcina acetivorans GN=rps9p PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 4.692e-22 Identity = 55/137 (40.15%), Postives = 80/137 (58.39%), Query Frame = 1 Query: 88 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 498 V G+ KTA A +G G ++IN P+EL PE+ K EP+L+ G +G+D+ + V+GGG Q A+R ++A+ +V + + I+D YDR LLV+D R+ E K FGG GARA++QKSYR Sbjct: 5 VNSSGKHKTATARATVMKGTGKVRINKIPLELYTPELAMMKISEPLLIAGNDVVSGLDINVDVRGGGIIGQANAVRTAVARGIVEW-------TNDTAIRDNFAAYDRNLLVSDSRQKESKNFGGPGARAKYQKSYR 134 The following BLAST results are available for this feature:
BLAST of CX300472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300472 ID=CX300472; Name=CX300472; organism=Citrus clementina; type=EST; length=532bpback to top |