CX300473

Overview
NameCX300473
Unique NameCX300473
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300473 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.005e-45
Identity = 88/116 (75.86%), Postives = 96/116 (82.76%), Query Frame = 2
Query:  194 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 541
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHIADPV NNAWA+ATNFVPGK
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
BLAST of CX300473 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.536e-45
Identity = 87/116 (75.00%), Postives = 96/116 (82.76%), Query Frame = 2
Query:  194 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 541
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116          
BLAST of CX300473 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 8.537e-45
Identity = 87/116 (75.00%), Postives = 96/116 (82.76%), Query Frame = 2
Query:  194 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 541
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265          
BLAST of CX300473 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 8.537e-45
Identity = 87/116 (75.00%), Postives = 96/116 (82.76%), Query Frame = 2
Query:  194 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 541
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265          
BLAST of CX300473 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.484e-44
Identity = 88/124 (70.97%), Postives = 98/124 (79.03%), Query Frame = 2
Query:  173 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXX-AFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 541
            LDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+                 +FDPL    DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124          
BLAST of CX300473 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 7.739e-38
Identity = 88/167 (52.69%), Postives = 107/167 (64.07%), Query Frame = 2
Query:    8 PETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 505
            PE FAK +  E+IH+RWAMLGA G + PE L+K G   G EAVWFK GA +     L+Y G    I    +LA+ A +VVL+G  E YRI                 FDPLGLA DP+Q A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL  H++DP  NN
Sbjct:  104 PENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA-EVVLLGGAEYYRITNGLDFEDKLHPGGP--FDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265          
BLAST of CX300473 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.050e-26
Identity = 66/117 (56.41%), Postives = 75/117 (64.10%), Query Frame = 2
Query:  197 LIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA---FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNA-WAYATNFVP 535
            LIHA+S+LAI A QV+LMG VEGYR                     FDPLGLADDPD F ELKVKE+KNGRLAM  M GF+ QAIVTG+GP+EN   H+ DP A+N   A  T F P
Sbjct:    5 LIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121          
BLAST of CX300473 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.262e-21
Identity = 67/168 (39.88%), Postives = 86/168 (51.19%), Query Frame = 2
Query:    8 PETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHIADPVANN 505
            PE F + +E E+ H RWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + + F E  R                 AFDPLG + DP +F ELK+KE+KNGRLAM +  GF V Q+   G GP+ENL  H+ADP  NN
Sbjct:   77 PENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGG---AFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232          
BLAST of CX300473 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.859e-21
Identity = 65/175 (37.14%), Postives = 87/175 (49.71%), Query Frame = 2
Query:   38 EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR-----------------IXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 505
            EVI+ R+AMLGA G + PEIL K G+   E    WF+ G  I   G  +Y  +           ++  ++ LMGF E  R                 +                 F+PLG   D     ELK+KE+KNGRLAM ++ G+F+QA+VTG GP +NL DH+ADPV NN
Sbjct:  100 EVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265          
BLAST of CX300473 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.582e-21
Identity = 67/168 (39.88%), Postives = 86/168 (51.19%), Query Frame = 2
Query:    8 PETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHIADPVANN 505
            P    + +E E+IH RWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + + FVE  R                 AFDPLG + DP +F ELKVKE+KNGRLA+ ++ GF V Q+   G GP+ENL  H+ADP  NN
Sbjct:   78 PANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233          
The following BLAST results are available for this feature:
BLAST of CX300473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CB2E_SOLLC5.005e-4575.86Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC6.536e-4575.00Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC8.537e-4575.00Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC8.537e-4575.00Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_RAPSA2.484e-4470.97Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB26_ARATH7.739e-3852.69Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB21_EUGGR3.050e-2656.41Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB121_HORVU2.262e-2139.88Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB13_SOLLC3.859e-2137.14Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB11_SOLLC6.582e-2139.88Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC07010F04SK SaltLeaf1 Citrus clementina cDNA clone C07010F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300473 ID=CX300473; Name=CX300473; organism=Citrus clementina; type=EST; length=596bp
AGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACA
GCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTC
TCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGGTTCAAGGCTGGCGC
TCAAATCTTCTCTGAAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCA
TTCATGCTCAGAGCATTTTGGCTATCTGGGCCTGCCAGGTTGTGCTCATG
GGTTTTGTTGAAGGATACAGAATTGGTGGCGGTCCTCTTGGTGAAGGACT
TGACCCACTTTACCCTGGTGGTGCTTTTGACCCACTTGGTTTGGCTGATG
ACCCCGATCAATTTGCTGAGTTGAAGGTCAAGGAGCTCAAGAATGGCCGT
CTGGCTATGTTCTCCATGTTTGGATTCTTTGTTCAGGCTATTGTCACTGG
GAAGGGTCCAATTGAGAACCTCTACGACCACATTGCTGATCCTGTGGCCA
ACAATGCCTGGGCTTATGCCACTAACTTTGTTCCCGGAAAGTGAAGAAAC
TCATGACTTGATGGTGTCTGTTTCATCTGTAACATTATTCTATCTA
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