CX300477

Overview
NameCX300477
Unique NameCX300477
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length426
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig473 contig Ccv1_Contig473:182..607. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300477 vs. ExPASy Swiss-Prot
Match: SMO3L_DANRE (Small ubiquitin-related modifier 3-like OS=Danio rerio GN=sumo3l PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.297e-18
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 2
Query:   11 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA 253
            ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:   13 ENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSIRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGS 93          
BLAST of CX300477 vs. ExPASy Swiss-Prot
Match: SMO2B_XENLA (Small ubiquitin-related modifier 2-B OS=Xenopus laevis GN=sumo2-B PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.297e-18
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 2
Query:    8 DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA 253
            + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:   13 ENNDHINLKVAGQDGSVVQFKIKRHTPLNKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGS 94          
BLAST of CX300477 vs. ExPASy Swiss-Prot
Match: SUMO3_RAT (Small ubiquitin-related modifier 3 OS=Rattus norvegicus GN=Sumo3 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.694e-18
Identity = 44/80 (55.00%), Postives = 54/80 (67.50%), Query Frame = 2
Query:   11 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 250
            ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:   13 ENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of CX300477 vs. ExPASy Swiss-Prot
Match: SUMO3_HUMAN (Small ubiquitin-related modifier 3 OS=Homo sapiens GN=SUMO3 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.694e-18
Identity = 44/80 (55.00%), Postives = 54/80 (67.50%), Query Frame = 2
Query:   11 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 250
            ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:   13 ENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of CX300477 vs. ExPASy Swiss-Prot
Match: SUMO3_CHICK (Small ubiquitin-related modifier 3 OS=Gallus gallus GN=SUMO3 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.694e-18
Identity = 44/80 (55.00%), Postives = 54/80 (67.50%), Query Frame = 2
Query:   11 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 250
            ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:   13 ENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of CX300477 vs. ExPASy Swiss-Prot
Match: SUMO2_RAT (Small ubiquitin-related modifier 2 OS=Rattus norvegicus GN=Sumo2 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.694e-18
Identity = 44/81 (54.32%), Postives = 54/81 (66.67%), Query Frame = 2
Query:    8 DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 250
            + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:   13 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of CX300477 vs. ExPASy Swiss-Prot
Match: SUMO2_PIG (Small ubiquitin-related modifier 2 OS=Sus scrofa GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.694e-18
Identity = 44/81 (54.32%), Postives = 54/81 (66.67%), Query Frame = 2
Query:    8 DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 250
            + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:   13 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of CX300477 vs. ExPASy Swiss-Prot
Match: SUMO2_MOUSE (Small ubiquitin-related modifier 2 OS=Mus musculus GN=Sumo2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.694e-18
Identity = 44/81 (54.32%), Postives = 54/81 (66.67%), Query Frame = 2
Query:    8 DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 250
            + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:   13 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of CX300477 vs. ExPASy Swiss-Prot
Match: SUMO2_MACFA (Small ubiquitin-related modifier 2 OS=Macaca fascicularis GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.694e-18
Identity = 44/81 (54.32%), Postives = 54/81 (66.67%), Query Frame = 2
Query:    8 DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 250
            + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:   13 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of CX300477 vs. ExPASy Swiss-Prot
Match: SUMO2_HUMAN (Small ubiquitin-related modifier 2 OS=Homo sapiens GN=SUMO2 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.694e-18
Identity = 44/81 (54.32%), Postives = 54/81 (66.67%), Query Frame = 2
Query:    8 DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 250
            + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:   13 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
The following BLAST results are available for this feature:
BLAST of CX300477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SMO3L_DANRE1.297e-1854.32Small ubiquitin-related modifier 3-like OS=Danio r... [more]
SMO2B_XENLA1.297e-1853.66Small ubiquitin-related modifier 2-B OS=Xenopus la... [more]
SUMO3_RAT1.694e-1855.00Small ubiquitin-related modifier 3 OS=Rattus norve... [more]
SUMO3_HUMAN1.694e-1855.00Small ubiquitin-related modifier 3 OS=Homo sapiens... [more]
SUMO3_CHICK1.694e-1855.00Small ubiquitin-related modifier 3 OS=Gallus gallu... [more]
SUMO2_RAT1.694e-1854.32Small ubiquitin-related modifier 2 OS=Rattus norve... [more]
SUMO2_PIG1.694e-1854.32Small ubiquitin-related modifier 2 OS=Sus scrofa G... [more]
SUMO2_MOUSE1.694e-1854.32Small ubiquitin-related modifier 2 OS=Mus musculus... [more]
SUMO2_MACFA1.694e-1854.32Small ubiquitin-related modifier 2 OS=Macaca fasci... [more]
SUMO2_HUMAN1.694e-1854.32Small ubiquitin-related modifier 2 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionC07010F08SK SaltLeaf1 Citrus clementina cDNA clone C07010F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300477 ID=CX300477; Name=CX300477; organism=Citrus clementina; type=EST; length=426bp
GCCCGTCGATCAGTCGGCGCACATTAACCTCAAAGTCAAGGGCCAGGATG
GCAATGAGGTGTTTTTTAGAATTAAGCGAAGCACCCAGTTGAAAAAGCTC
ATGAATGCCTACTGTGATCGGCAGTCGGTGGAGTTAAACTCTATTGCTTT
CTTGTTTGATGGGCGGAGACTCCGAGGAGAGCAGACTCCAGATGAGCTTG
AGATGGAGGATGGAGATGAAATTGATGCAATGCTGCATCAGACTGGAGGT
GCGCTTGGAAGCGGTTAGCTGCAGTTTGAAATATTTTGAGCATCGCTGGC
GGACTTGATGTTTGAGTTTTTTAAATTAGCCTATATCTATGGAAATATTA
CTGTAAATGATGACTTGGATCTTATAATTAACTTGAATTTAAGTCATGGT
TTATTATCAAAAAAAAAAAAAAAAAA
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