CX300477

Overview
NameCX300477
Unique NameCX300477
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length426
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig473 contig Ccv1_Contig473:182..607. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300477 vs. ExPASy Swiss-Prot
Match: SUMO2_CRIGR (Small ubiquitin-related modifier 2 OS=Cricetulus griseus GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.694e-18
Identity = 44/81 (54.32%), Postives = 54/81 (66.67%), Query Frame = 2
Query:    8 DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 250
            + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:   13 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of CX300477 vs. ExPASy Swiss-Prot
Match: SUMO2_CHICK (Small ubiquitin-related modifier 2 OS=Gallus gallus GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.694e-18
Identity = 44/81 (54.32%), Postives = 54/81 (66.67%), Query Frame = 2
Query:    8 DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 250
            + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:   13 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of CX300477 vs. ExPASy Swiss-Prot
Match: SUMO2_BOVIN (Small ubiquitin-related modifier 2 OS=Bos taurus GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.694e-18
Identity = 44/81 (54.32%), Postives = 54/81 (66.67%), Query Frame = 2
Query:    8 DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 250
            + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:   13 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of CX300477 vs. ExPASy Swiss-Prot
Match: SUMO2_DANRE (Small ubiquitin-related modifier 2 OS=Danio rerio GN=sumo2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.212e-18
Identity = 44/81 (54.32%), Postives = 54/81 (66.67%), Query Frame = 2
Query:    8 DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 250
            + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:   13 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLTMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of CX300477 vs. ExPASy Swiss-Prot
Match: SUMO_CAEEL (Small ubiquitin-related modifier OS=Caenorhabditis elegans GN=smo-1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.194e-17
Identity = 41/81 (50.62%), Postives = 52/81 (64.20%), Query Frame = 2
Query:    8 DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 250
            D + +I +KV GQD NEV FR+K  T + KL  +Y DR  V +NS+ FLFDGRR+  + TP  LEMED D I+    Q GG
Sbjct:   10 DNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFDGRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90          
BLAST of CX300477 vs. ExPASy Swiss-Prot
Match: SUMO1_XENTR (Small ubiquitin-related modifier 1 OS=Xenopus tropicalis GN=sumo1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.194e-17
Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = 2
Query:   20 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 250
            +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+   QTP EL ME+ D I+    QTGG
Sbjct:   22 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRISDHQTPKELGMEEEDVIEVYQEQTGG 98          
BLAST of CX300477 vs. ExPASy Swiss-Prot
Match: SMO1B_XENLA (Small ubiquitin-related modifier 1-B OS=Xenopus laevis GN=sumo1-B PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.194e-17
Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = 2
Query:   20 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 250
            +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+   QTP EL ME+ D I+    QTGG
Sbjct:   22 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRISDHQTPKELGMEEEDVIEVYQEQTGG 98          
BLAST of CX300477 vs. ExPASy Swiss-Prot
Match: SUMO4_PIG (Small ubiquitin-related modifier 4 OS=Sus scrofa GN=SUMO4 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.293e-17
Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 2
Query:    8 DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 250
            + + HINLKV GQDG+   F+I+R T L KLM AYC+RQ + +  I F  DG+ +    TP +LE+ED D ID +  QTGG
Sbjct:   13 ENNDHINLKVAGQDGSVAQFKIRRHTPLSKLMKAYCERQGLSIRQIRFRVDGQPINETHTPAQLELEDEDTIDVLQQQTGG 93          
BLAST of CX300477 vs. ExPASy Swiss-Prot
Match: SUMO1_SPETR (Small ubiquitin-related modifier 1 OS=Spermophilus tridecemlineatus GN=SUMO1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.293e-17
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 2
Query:   11 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 250
            +  +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+    TP EL ME+ D I+    QTGG
Sbjct:   18 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97          
BLAST of CX300477 vs. ExPASy Swiss-Prot
Match: SUMO1_RAT (Small ubiquitin-related modifier 1 OS=Rattus norvegicus GN=Sumo1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.293e-17
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 2
Query:   11 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 250
            +  +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+    TP EL ME+ D I+    QTGG
Sbjct:   18 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97          
The following BLAST results are available for this feature:
BLAST of CX300477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SUMO2_CRIGR1.694e-1854.32Small ubiquitin-related modifier 2 OS=Cricetulus g... [more]
SUMO2_CHICK1.694e-1854.32Small ubiquitin-related modifier 2 OS=Gallus gallu... [more]
SUMO2_BOVIN1.694e-1854.32Small ubiquitin-related modifier 2 OS=Bos taurus G... [more]
SUMO2_DANRE2.212e-1854.32Small ubiquitin-related modifier 2 OS=Danio rerio ... [more]
SUMO_CAEEL3.194e-1750.62Small ubiquitin-related modifier OS=Caenorhabditis... [more]
SUMO1_XENTR3.194e-1751.95Small ubiquitin-related modifier 1 OS=Xenopus trop... [more]
SMO1B_XENLA3.194e-1751.95Small ubiquitin-related modifier 1-B OS=Xenopus la... [more]
SUMO4_PIG9.293e-1749.38Small ubiquitin-related modifier 4 OS=Sus scrofa G... [more]
SUMO1_SPETR9.293e-1748.75Small ubiquitin-related modifier 1 OS=Spermophilus... [more]
SUMO1_RAT9.293e-1748.75Small ubiquitin-related modifier 1 OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionC07010F08SK SaltLeaf1 Citrus clementina cDNA clone C07010F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300477 ID=CX300477; Name=CX300477; organism=Citrus clementina; type=EST; length=426bp
GCCCGTCGATCAGTCGGCGCACATTAACCTCAAAGTCAAGGGCCAGGATG
GCAATGAGGTGTTTTTTAGAATTAAGCGAAGCACCCAGTTGAAAAAGCTC
ATGAATGCCTACTGTGATCGGCAGTCGGTGGAGTTAAACTCTATTGCTTT
CTTGTTTGATGGGCGGAGACTCCGAGGAGAGCAGACTCCAGATGAGCTTG
AGATGGAGGATGGAGATGAAATTGATGCAATGCTGCATCAGACTGGAGGT
GCGCTTGGAAGCGGTTAGCTGCAGTTTGAAATATTTTGAGCATCGCTGGC
GGACTTGATGTTTGAGTTTTTTAAATTAGCCTATATCTATGGAAATATTA
CTGTAAATGATGACTTGGATCTTATAATTAACTTGAATTTAAGTCATGGT
TTATTATCAAAAAAAAAAAAAAAAAA
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