CX300480

Overview
NameCX300480
Unique NameCX300480
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL8_SPOFR (60S ribosomal protein L8 OS=Spodoptera frugiperda GN=RpL8 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.681e-43
Identity = 79/108 (73.15%), Postives = 91/108 (84.26%), Query Frame = 2
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            G++A VI HNPD   TR+KLPSGAKK++PS  R M+G VAGGGR +KP+LKAG AYHK++VKRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R    G+KVGLI
Sbjct:  131 GNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLI 238          
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL8_MAMBR (60S ribosomal protein L8 OS=Mamestra brassicae GN=RpL8 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.681e-43
Identity = 79/108 (73.15%), Postives = 91/108 (84.26%), Query Frame = 2
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            G++A VI HNPD   TR+KLPSGAKK++PS  R M+G VAGGGR +KP+LKAG AYHK++VKRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R    G+KVGLI
Sbjct:  131 GNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLI 238          
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_ASHGO (60S ribosomal protein L2 OS=Ashbya gossypii GN=RPL2 PE=4 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.142e-42
Identity = 77/108 (71.30%), Postives = 89/108 (82.41%), Query Frame = 2
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            G+Y +VI HNPD + TRI+LPSGAKKIV S  R +IG +AGGGR +KPLLKAG A+HK++VKRN WPK RGVAMNPV+HPHGGGNHQHIG AST+ R A  GQK GLI
Sbjct:  131 GNYVIVIGHNPDENKTRIRLPSGAKKIVSSDARGVIGVIAGGGRVDKPLLKAGRAFHKYKVKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLI 238          
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_CANGA (60S ribosomal protein L2 OS=Candida glabrata GN=RPL2 PE=4 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 5.409e-42
Identity = 74/108 (68.52%), Postives = 90/108 (83.33%), Query Frame = 2
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            G+Y ++I HNPD + TR++LPSGAKKI+ S  R +IG +AGGGRT+KPLLKAG A+HK+++KRN WPK RGVAMNPV+HPHGGGNHQHIG AST+ R A  GQK GLI
Sbjct:  131 GNYVIIIGHNPDENKTRVRLPSGAKKIISSDARGVIGVIAGGGRTDKPLLKAGRAFHKYKLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLI 238          
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_YEAST (60S ribosomal protein L2 OS=Saccharomyces cerevisiae GN=RPL2A PE=1 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 1.205e-41
Identity = 73/108 (67.59%), Postives = 89/108 (82.41%), Query Frame = 2
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            G+Y ++I HNPD + TR++LPSGAKK++ S  R +IG +AGGGR +KPLLKAG A+HK+R+KRN WPK RGVAMNPV+HPHGGGNHQHIG AST+ R A  GQK GLI
Sbjct:  131 GNYVIIIGHNPDENKTRVRLPSGAKKVISSDARGVIGVIAGGGRVDKPLLKAGRAFHKYRLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLI 238          
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_STAMF (50S ribosomal protein L2P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.744e-32
Identity = 66/108 (61.11%), Postives = 80/108 (74.07%), Query Frame = 2
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            G YA+++        T+++LPSG    VP+  RA IG +AGGGR EKPLLKAGNAYHK++VK   WPKVRGVAMN V HPHGGG+HQH+G  STV R+ PPG+KVG I
Sbjct:  124 GTYALIVGRA--GTKTQVQLPSGKIIEVPNNARATIGVIAGGGRDEKPLLKAGNAYHKWKVKAKKWPKVRGVAMNAVSHPHGGGSHQHVGKPSTVARETPPGRKVGHI 229          
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_DESK1 (50S ribosomal protein L2P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.785e-30
Identity = 64/108 (59.26%), Postives = 77/108 (71.30%), Query Frame = 2
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            G YAV++        T+++LPSG    VP+  RAMIG +AGGGR EKPLLKAG AY+K+  K   WPKVRGVAMN   HPHGGG+HQH+G  STV R+ PPG+KVG I
Sbjct:  124 GTYAVIVGRA--GGKTQVQLPSGRVIEVPNESRAMIGVIAGGGRLEKPLLKAGAAYYKWSAKSRVWPKVRGVAMNAAFHPHGGGSHQHVGRPSTVARNTPPGRKVGHI 229          
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_METM5 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.079e-29
Identity = 63/108 (58.33%), Postives = 73/108 (67.59%), Query Frame = 2
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            G YA VISH  D   T +KLPSG  K++   CRA +G VAGGGR EKP +KAG  YH    K   WPKVRGVAMN V+HP+GGG HQH+G  S+V R   PG+KVG I
Sbjct:  127 GCYAHVISH--DVGKTIVKLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKYHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRHTSPGRKVGHI 232          
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_METMP (50S ribosomal protein L2P OS=Methanococcus maripaludis GN=rpl2p PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.021e-29
Identity = 63/108 (58.33%), Postives = 73/108 (67.59%), Query Frame = 2
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            G YA VISH  D   T ++LPSG  K++   CRA +G VAGGGR EKP +KAG  YH    K   WPKVRGVAMN V+HP+GGG HQHIG  S+V R   PG+KVG I
Sbjct:  127 GCYAHVISH--DVGKTIVRLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKYHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHIGKPSSVSRHTSPGRKVGHI 232          
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_ARCFU (50S ribosomal protein L2P OS=Archaeoglobus fulgidus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.021e-29
Identity = 60/108 (55.56%), Postives = 74/108 (68.52%), Query Frame = 2
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            G +  V+S   D     +++PSG +K     CRAMIG VAGGGRT+KP +KAG  YHK + K   WP+VRGVAMN V+HP GGG HQH+G   TV R+APPG+KVG I
Sbjct:  123 GTFGFVVSREADK--VLVQMPSGKQKWFHPNCRAMIGVVAGGGRTDKPFVKAGKKYHKMKSKAAKWPRVRGVAMNAVDHPFGGGKHQHVGKPKTVSRNAPPGRKVGSI 228          
The following BLAST results are available for this feature:
BLAST of CX300480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
RL8_SPOFR1.681e-4373.1560S ribosomal protein L8 OS=Spodoptera frugiperda ... [more]
RL8_MAMBR1.681e-4373.1560S ribosomal protein L8 OS=Mamestra brassicae GN=... [more]
RL2_ASHGO4.142e-4271.3060S ribosomal protein L2 OS=Ashbya gossypii GN=RPL... [more]
RL2_CANGA5.409e-4268.5260S ribosomal protein L2 OS=Candida glabrata GN=RP... [more]
RL2_YEAST1.205e-4167.5960S ribosomal protein L2 OS=Saccharomyces cerevisi... [more]
RL2_STAMF1.744e-3261.1150S ribosomal protein L2P OS=Staphylothermus marin... [more]
RL2_DESK12.785e-3059.2650S ribosomal protein L2P OS=Desulfurococcus kamch... [more]
RL2_METM53.079e-2958.3350S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METMP4.021e-2958.3350S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_ARCFU4.021e-2955.5650S ribosomal protein L2P OS=Archaeoglobus fulgidu... [more]

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Properties
Property NameValue
Genbank descriptionC07010F11SK SaltLeaf1 Citrus clementina cDNA clone C07010F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300480 ID=CX300480; Name=CX300480; organism=Citrus clementina; type=EST; length=535bp
GGGTGATTATGCTGTTGTCATTAGTCATAATCCTGATAACGACACTACTA
GGATTAAGCTCCCATCTGGTGCCAAGAAGATTGTGCCGAGTGGGTGCCGT
GCTATGATTGGTCAAGTTGCCGGTGGAGGCAGAACAGAGAAGCCATTGTT
GAAGGCAGGAAATGCTTATCACAAGTTCAGGGTGAAGAGGAACTGCTGGC
CCAAGGTCCGTGGTGTTGCCATGAACCCTGTTGAGCATCCCCATGGTGGT
GGTAACCACCAGCACATTGGGCATGCAAGTACGGTTCGCCGTGATGCACC
CCCTGGCCAAAAGGTTGGTCTTATTGCTGCTAGGAGGACTGGTCGTCTTA
GAGGACAAGCAGCTGCCACTGCTGCAAAGGCTGACAAGGCTTAAAGTTTC
GCTTGAGCTCATTTTAATTTTGTTTTGTGCTGGTGAACATCTTCATATGG
TTGTTATCTGTTAGCATTAGATTTTGGTTTGCAATTTTGGAAGGTTACTA
ACTTCTTGTGATTAGTACATTGAAAGTGAGAGTAT
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