CX300480
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_HALSA (50S ribosomal protein L2P OS=Halobacterium salinarium GN=rpl2p PE=3 SV=3) HSP 1 Score: 120.553 bits (301), Expect = 4.915e-27 Identity = 58/106 (54.72%), Postives = 73/106 (68.87%), Query Frame = 2 Query: 2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 319 G A +++H + D T ++LPSG K + CRA IG VAGGGRTEKP +KAGN +HK + + WP+VRGVAMN V+HP GGG QH G +V RDA PG+KVG Sbjct: 124 GVNADLVTH--ERDATIVELPSGETKRLSPDCRATIGVVAGGGRTEKPFVKAGNKHHKMKARGTKWPRVRGVAMNAVDHPFGGGGRQHPGRPKSVSRDAAPGRKVG 227
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_HALS3 (50S ribosomal protein L2P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl2p PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 4.915e-27 Identity = 58/106 (54.72%), Postives = 73/106 (68.87%), Query Frame = 2 Query: 2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 319 G A +++H + D T ++LPSG K + CRA IG VAGGGRTEKP +KAGN +HK + + WP+VRGVAMN V+HP GGG QH G +V RDA PG+KVG Sbjct: 124 GVNADLVTH--ERDATIVELPSGETKRLSPDCRATIGVVAGGGRTEKPFVKAGNKHHKMKARGTKWPRVRGVAMNAVDHPFGGGGRQHPGRPKSVSRDAAPGRKVG 227
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_META3 (50S ribosomal protein L2P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl2p PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 6.419e-27 Identity = 62/108 (57.41%), Postives = 71/108 (65.74%), Query Frame = 2 Query: 2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325 G YA VI+H D T IKLPSG K + CRA IG VAGGGR EKP+ KAG YH + K WP+VRGVAMN V+HP GGGN QH G +T+ R PG+KVG I Sbjct: 127 GCYAHVITH--DVSKTIIKLPSGHMKTLNPMCRATIGVVAGGGRKEKPITKAGKKYHAMKAKAVLWPRVRGVAMNAVDHPFGGGNTQHAGKPTTISRHTSPGRKVGHI 232
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_SULTO (50S ribosomal protein L2P OS=Sulfolobus tokodaii GN=rpl2p PE=3 SV=2) HSP 1 Score: 119.398 bits (298), Expect = 1.095e-26 Identity = 62/108 (57.41%), Postives = 71/108 (65.74%), Query Frame = 2 Query: 2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325 G Y VV+ D +KL S V S RA++G VAGGG TEKPLLKAGN Y K++VK WP VRGVAMN V HPHGGG HQ + STV R+APPG+KVG I Sbjct: 122 GTYGVVVGKT--GDKVLVKLSSEKIAQVSSNARAIVGVVAGGGVTEKPLLKAGNNYWKYKVKAKKWPHVRGVAMNAVSHPHGGGLHQSVSRPSTVSRNAPPGRKVGHI 227
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_HALWD (50S ribosomal protein L2P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl2p PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.095e-26 Identity = 58/106 (54.72%), Postives = 72/106 (67.92%), Query Frame = 2 Query: 2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 319 G A +++H D D I+LPSG K + C+A IG VAGGGRTEKP +KAG +HK + + WP+VRGVAMN V+HP GGG QH G +V RDAPPG+KVG Sbjct: 124 GTSAQLMTH--DRDVVVIELPSGETKRLSPACQATIGVVAGGGRTEKPFVKAGKKHHKMKARGIKWPRVRGVAMNAVDHPFGGGGRQHPGQPKSVSRDAPPGRKVG 227
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_SULSO (50S ribosomal protein L2P OS=Sulfolobus solfataricus GN=rpl2p PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 1.868e-26 Identity = 62/108 (57.41%), Postives = 73/108 (67.59%), Query Frame = 2 Query: 2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325 G YAVV+ + D I+LPS K V + RA +G VAGGG EKPLLKAG Y K++VK WP VRGVAMN V+HPHGGG HQ + STV R+APPG+KVG I Sbjct: 122 GSYAVVVGKS--GDRVLIRLPSDKIKAVSNKARATVGIVAGGGVIEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHI 227
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_UNCMA (50S ribosomal protein L2P OS=Uncultured methanogenic archaeon RC-I GN=rpl2p PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 3.186e-26 Identity = 57/108 (52.78%), Postives = 73/108 (67.59%), Query Frame = 2 Query: 2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325 G YA++++H + T +++PSG K + CRA IG VAGGGRTEKP ++AGN ++K K WP VRGVAMN V+HP GGG QH G TV R+ PPG+KVG I Sbjct: 124 GVYAIIVAH--EGKKTVVQMPSGEIKRLNPKCRATIGVVAGGGRTEKPFVRAGNKWYKMANKATKWPVVRGVAMNAVDHPFGGGGRQHPGRPKTVSRNTPPGRKVGSI 229
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_NATPD (50S ribosomal protein L2P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl2p PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 3.186e-26 Identity = 56/106 (52.83%), Postives = 72/106 (67.92%), Query Frame = 2 Query: 2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 319 G A +++H D + ++LPSG + + CRA IG VAGGGRTEKP +KAGN +HK + + WP+VRGVAMN V+HP GGG QH G +V RD PPG+KVG Sbjct: 124 GVSATLLTH--DRNAAVVQLPSGEMRRLSPECRATIGVVAGGGRTEKPFVKAGNKHHKMKSRGGKWPRVRGVAMNAVDHPFGGGGRQHPGKPKSVSRDTPPGRKVG 227
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_HALMA (50S ribosomal protein L2P OS=Haloarcula marismortui GN=rpl2p PE=1 SV=4) HSP 1 Score: 117.857 bits (294), Expect = 3.186e-26 Identity = 56/106 (52.83%), Postives = 72/106 (67.92%), Query Frame = 2 Query: 2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 319 G A +++H D + +KLPSG K + CRA IG VAGGGRT+KP +KAGN +HK + + WP VRGVAMN V+HP GGG QH G ++ R+APPG+KVG Sbjct: 124 GVNAQLLTH--DRNVAVVKLPSGEMKRLDPQCRATIGVVAGGGRTDKPFVKAGNKHHKMKARGTKWPNVRGVAMNAVDHPFGGGGRQHPGKPKSISRNAPPGRKVG 227
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_METBF (50S ribosomal protein L2P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl2p PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 5.434e-26 Identity = 56/108 (51.85%), Postives = 77/108 (71.30%), Query Frame = 2 Query: 2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325 G YA V++H +++ T + +PSG K + CRA++G VAGGGR ++P LKAG YHK + + +P+V GVAMNPV+HP GGG +H G +TV R+APPG+KVGLI Sbjct: 124 GVYATVVTH--ESNRTAVAMPSGNIKWLNPKCRAVVGIVAGGGRVDRPWLKAGKKYHKMKTRAAKYPRVSGVAMNPVDHPFGGGAWKHPGKPTTVSRNAPPGRKVGLI 229 The following BLAST results are available for this feature:
BLAST of CX300480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 94
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300480 ID=CX300480; Name=CX300480; organism=Citrus clementina; type=EST; length=535bpback to top |