CX300480

Overview
NameCX300480
Unique NameCX300480
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12493 contig Ccv1_Contig12493:601..1098. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_PYRHO (50S ribosomal protein L2P OS=Pyrococcus horikoshii GN=rpl2p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.283e-24
Identity = 57/108 (52.78%), Postives = 69/108 (63.89%), Query Frame = 2
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            G YA+V+S   + D   ++LPSG  K     CRA IG VAGGGR EKPL+KAG AY+K++ +   WP  RGV MN V HP GG  H H G  +T  R APPG+KVG I
Sbjct:  126 GTYALVVSR--EKDKVIVQLPSGELKAFDPNCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNKFWPTPRGVKMNAVNHPFGGKEH-HPGKPTTTSRRAPPGRKVGHI 230          
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_THENV (50S ribosomal protein L2P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.982e-24
Identity = 56/108 (51.85%), Postives = 72/108 (66.67%), Query Frame = 2
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            G YAVV+   P+ + T ++LPSG    V +  RA +G VAGGGR EKP++KAG  Y++ R K   +P VRG AM+P  HPHGGG+HQ  G  + V + APPGQKVG I
Sbjct:  122 GTYAVVVGQKPEENKTIVRLPSGRTMEVDARGRATVGLVAGGGRIEKPMVKAGKKYYRARAKAWKYPLVRGKAMSPYAHPHGGGSHQKGG--TPVSKTAPPGQKVGFI 227          
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_PYRCJ (50S ribosomal protein L2P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.982e-24
Identity = 58/108 (53.70%), Postives = 71/108 (65.74%), Query Frame = 2
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            G YA+VI   P+ + T ++LPSG    V +  RA IG VAGGGR EKP +KAG  YH+ R K   +P VRG AM+P  HPHGGG+HQ  G  + V + APPGQKVG I
Sbjct:  121 GTYALVIGQRPEENKTIVRLPSGRVIEVDARGRATIGIVAGGGRVEKPFVKAGKKYHRARAKSWKYPTVRGKAMSPYAHPHGGGSHQKGG--TPVPKTAPPGQKVGFI 226          
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_PYRAB (50S ribosomal protein L2P OS=Pyrococcus abyssi GN=rpl2p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.982e-24
Identity = 57/108 (52.78%), Postives = 69/108 (63.89%), Query Frame = 2
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            G YA+V+S   + D   ++LPSG  K     CRA IG VAGGGR EKPL+KAG AY+K++ +   WP  RGV MN V HP GG  H H G  +T  R APPG+KVG I
Sbjct:  126 GTYALVVSR--EKDKVIVQLPSGELKAFNPNCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNRFWPTPRGVKMNAVNHPFGGKEH-HPGKPTTTSRRAPPGRKVGHI 230          
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_METPE (50S ribosomal protein L2P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.982e-24
Identity = 53/108 (49.07%), Postives = 67/108 (62.04%), Query Frame = 2
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            G  A++I    D     +K+PSG  K   S C A +G VAGGGR EKP +KAG  +HK + +   WP+VRGVAMN ++HP GGG HQH G   TV R   PG+KVG +
Sbjct:  124 GVQAIIIDKTVDR--VGVKMPSGKMKWFSSRCLATVGVVAGGGRGEKPFVKAGKKFHKVKSQATYWPRVRGVAMNVIDHPFGGGGHQHTGRPKTVSRGTSPGRKVGSV 229          
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_METLZ (50S ribosomal protein L2P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.894e-24
Identity = 49/91 (53.85%), Postives = 61/91 (67.03%), Query Frame = 2
Query:   53 IKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            +++PSG  K     C A +G VAGGGR +KP+LKAG  YHK +     WP+VRGVAMN ++HP GGG HQH G   TV R A PG+KVG +
Sbjct:  141 VRMPSGKPKWFNEACLATVGLVAGGGRIDKPILKAGKQYHKMKTSATRWPRVRGVAMNVIDHPFGGGGHQHPGKPKTVARGASPGRKVGSV 231          
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_CALMQ (50S ribosomal protein L2P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.894e-24
Identity = 59/106 (55.66%), Postives = 72/106 (67.92%), Query Frame = 2
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 319
            G Y VV+ H   + TT ++LPSG    V S  RA IG VAGGGR EKP +KAGN YH+ R K   +PKVRG AM+   HPHGGG+HQ  G  + V+++APPGQKVG
Sbjct:  127 GTYGVVMIHR--DSTTLVQLPSGRMIEVDSRARATIGIVAGGGRIEKPFVKAGNKYHRARTKAWKYPKVRGKAMSAYAHPHGGGSHQQGG--TPVKKNAPPGQKVG 228          
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_SULAC (50S ribosomal protein L2P OS=Sulfolobus acidocaldarius GN=rpl2p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.643e-24
Identity = 59/108 (54.63%), Postives = 68/108 (62.96%), Query Frame = 2
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            G YAV+       +   IKL S     V    RA +G +AGGG  EKPLLKAGN Y K+RV+   WP VRGVAMN V HPHGGG HQ +   STV R+APPG+KVG I
Sbjct:  122 GSYAVI--SGKAGNKVLIKLSSEKIVEVSQNARATVGIIAGGGFVEKPLLKAGNNYWKYRVRAVKWPVVRGVAMNAVSHPHGGGLHQSVSRPSTVSRNAPPGRKVGHI 227          
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_METHJ (50S ribosomal protein L2P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.643e-24
Identity = 50/91 (54.95%), Postives = 62/91 (68.13%), Query Frame = 2
Query:   53 IKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            +++PSG+ K     CRA IG VAGGGR+EKP +KAG  YHK +   + WP+VRG AMN ++HP GGG HQH G   TV R   PG+KVG I
Sbjct:  138 VRMPSGSTKWFNGQCRATIGIVAGGGRSEKPFVKAGKKYHKMKNTASNWPRVRGFAMNVIDHPFGGGGHQHAGRPKTVSRGTSPGRKVGHI 228          
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_PYRIL (50S ribosomal protein L2P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.133e-23
Identity = 57/106 (53.77%), Postives = 69/106 (65.09%), Query Frame = 2
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 319
            G YAVV+   P+ + T I+LPSG    V S  RA +G VAGGGR EKP LKAG  YH+ + K   +P VRG AM+P  HPHGGG+H   G  + V + APPGQKVG
Sbjct:  123 GTYAVVVGQKPEENKTIIRLPSGKVVEVDSRGRATVGIVAGGGRIEKPFLKAGKKYHRAKAKAWKYPTVRGKAMSPYAHPHGGGSHPKGG--TPVPKTAPPGQKVG 226          
The following BLAST results are available for this feature:
BLAST of CX300480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
RL2_PYRHO2.283e-2452.7850S ribosomal protein L2P OS=Pyrococcus horikoshii... [more]
RL2_THENV2.982e-2451.8550S ribosomal protein L2P OS=Thermoproteus neutrop... [more]
RL2_PYRCJ2.982e-2453.7050S ribosomal protein L2P OS=Pyrobaculum calidifon... [more]
RL2_PYRAB2.982e-2452.7850S ribosomal protein L2P OS=Pyrococcus abyssi GN=... [more]
RL2_METPE2.982e-2449.0750S ribosomal protein L2P OS=Methanosphaerula palu... [more]
RL2_METLZ3.894e-2453.8550S ribosomal protein L2P OS=Methanocorpusculum la... [more]
RL2_CALMQ3.894e-2455.6650S ribosomal protein L2P OS=Caldivirga maquilinge... [more]
RL2_SULAC6.643e-2454.6350S ribosomal protein L2P OS=Sulfolobus acidocalda... [more]
RL2_METHJ6.643e-2454.9550S ribosomal protein L2P OS=Methanospirillum hung... [more]
RL2_PYRIL1.133e-2353.7750S ribosomal protein L2P OS=Pyrobaculum islandicu... [more]

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Properties
Property NameValue
Genbank descriptionC07010F11SK SaltLeaf1 Citrus clementina cDNA clone C07010F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300480 ID=CX300480; Name=CX300480; organism=Citrus clementina; type=EST; length=535bp
GGGTGATTATGCTGTTGTCATTAGTCATAATCCTGATAACGACACTACTA
GGATTAAGCTCCCATCTGGTGCCAAGAAGATTGTGCCGAGTGGGTGCCGT
GCTATGATTGGTCAAGTTGCCGGTGGAGGCAGAACAGAGAAGCCATTGTT
GAAGGCAGGAAATGCTTATCACAAGTTCAGGGTGAAGAGGAACTGCTGGC
CCAAGGTCCGTGGTGTTGCCATGAACCCTGTTGAGCATCCCCATGGTGGT
GGTAACCACCAGCACATTGGGCATGCAAGTACGGTTCGCCGTGATGCACC
CCCTGGCCAAAAGGTTGGTCTTATTGCTGCTAGGAGGACTGGTCGTCTTA
GAGGACAAGCAGCTGCCACTGCTGCAAAGGCTGACAAGGCTTAAAGTTTC
GCTTGAGCTCATTTTAATTTTGTTTTGTGCTGGTGAACATCTTCATATGG
TTGTTATCTGTTAGCATTAGATTTTGGTTTGCAATTTTGGAAGGTTACTA
ACTTCTTGTGATTAGTACATTGAAAGTGAGAGTAT
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