CX300480
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_NANEQ (50S ribosomal protein L2P OS=Nanoarchaeum equitans GN=rpl2p PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.433e-18 Identity = 47/108 (43.52%), Postives = 64/108 (59.26%), Query Frame = 2 Query: 2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325 GD+A+++ D ++LPSG K + + RA+IG +AGGGR EKP +KAGN Y+ + WP V GV N +HP GG H + TV + APPG+KVG I Sbjct: 124 GDFALLVQKL--GDKVIVQLPSGQFKTLSANARAVIGVIAGGGRKEKPFVKAGNKYYWASSRNRHWPVVNGVKKNASDHPFGGKRHSNHSKPFTVSKWAPPGRKVGYI 229
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_TROWT (50S ribosomal protein L2 OS=Tropheryma whipplei (strain Twist) GN=rplB PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 4.938e-11 Identity = 39/83 (46.99%), Postives = 46/83 (55.42%), Query Frame = 2 Query: 35 DNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 271 D D +KLPSG ++V CRA IG+V G R L KAG R+ W P VRGVAMNPV+HPHGGG + G Sbjct: 169 DGDFAILKLPSGEIRMVSLSCRATIGEVGNGQRLNVSLGKAG---------RSRWCGVRPSVRGVAMNPVDHPHGGGEGKTSG 242
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_TROW8 (50S ribosomal protein L2 OS=Tropheryma whipplei (strain TW08/27) GN=rplB PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 4.938e-11 Identity = 39/83 (46.99%), Postives = 46/83 (55.42%), Query Frame = 2 Query: 35 DNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 271 D D +KLPSG ++V CRA IG+V G R L KAG R+ W P VRGVAMNPV+HPHGGG + G Sbjct: 169 DGDFAILKLPSGEIRMVSLSCRATIGEVGNGQRLNVSLGKAG---------RSRWCGVRPSVRGVAMNPVDHPHGGGEGKTSG 242
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RK2_MORIN (50S ribosomal protein L2, chloroplastic OS=Morus indica GN=rpl2-A PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 6.449e-11 Identity = 33/77 (42.86%), Postives = 44/77 (57.14%), Query Frame = 2 Query: 35 DNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 253 + + +KLPSG +++P C A +GQV G +K L +AG+ CW P VRGV MNPV+HPHGGG Sbjct: 166 EGKSATLKLPSGEVRLIPKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233 The following BLAST results are available for this feature:
BLAST of CX300480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 94
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300480 ID=CX300480; Name=CX300480; organism=Citrus clementina; type=EST; length=535bpback to top |