CX300480

Overview
NameCX300480
Unique NameCX300480
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12493 contig Ccv1_Contig12493:601..1098. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_NANEQ (50S ribosomal protein L2P OS=Nanoarchaeum equitans GN=rpl2p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.433e-18
Identity = 47/108 (43.52%), Postives = 64/108 (59.26%), Query Frame = 2
Query:    2 GDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 325
            GD+A+++      D   ++LPSG  K + +  RA+IG +AGGGR EKP +KAGN Y+    +   WP V GV  N  +HP GG  H +     TV + APPG+KVG I
Sbjct:  124 GDFALLVQKL--GDKVIVQLPSGQFKTLSANARAVIGVIAGGGRKEKPFVKAGNKYYWASSRNRHWPVVNGVKKNASDHPFGGKRHSNHSKPFTVSKWAPPGRKVGYI 229          
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_TROWT (50S ribosomal protein L2 OS=Tropheryma whipplei (strain Twist) GN=rplB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.938e-11
Identity = 39/83 (46.99%), Postives = 46/83 (55.42%), Query Frame = 2
Query:   35 DNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 271
            D D   +KLPSG  ++V   CRA IG+V  G R    L KAG         R+ W    P VRGVAMNPV+HPHGGG  +  G
Sbjct:  169 DGDFAILKLPSGEIRMVSLSCRATIGEVGNGQRLNVSLGKAG---------RSRWCGVRPSVRGVAMNPVDHPHGGGEGKTSG 242          
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RL2_TROW8 (50S ribosomal protein L2 OS=Tropheryma whipplei (strain TW08/27) GN=rplB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.938e-11
Identity = 39/83 (46.99%), Postives = 46/83 (55.42%), Query Frame = 2
Query:   35 DNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 271
            D D   +KLPSG  ++V   CRA IG+V  G R    L KAG         R+ W    P VRGVAMNPV+HPHGGG  +  G
Sbjct:  169 DGDFAILKLPSGEIRMVSLSCRATIGEVGNGQRLNVSLGKAG---------RSRWCGVRPSVRGVAMNPVDHPHGGGEGKTSG 242          
BLAST of CX300480 vs. ExPASy Swiss-Prot
Match: RK2_MORIN (50S ribosomal protein L2, chloroplastic OS=Morus indica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.449e-11
Identity = 33/77 (42.86%), Postives = 44/77 (57.14%), Query Frame = 2
Query:   35 DNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 253
            +  +  +KLPSG  +++P  C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  166 EGKSATLKLPSGEVRLIPKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
The following BLAST results are available for this feature:
BLAST of CX300480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
RL2_NANEQ1.433e-1843.5250S ribosomal protein L2P OS=Nanoarchaeum equitans... [more]
RL2_TROWT4.938e-1146.9950S ribosomal protein L2 OS=Tropheryma whipplei (s... [more]
RL2_TROW84.938e-1146.9950S ribosomal protein L2 OS=Tropheryma whipplei (s... [more]
RK2_MORIN6.449e-1142.8650S ribosomal protein L2, chloroplastic OS=Morus i... [more]

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Properties
Property NameValue
Genbank descriptionC07010F11SK SaltLeaf1 Citrus clementina cDNA clone C07010F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300480 ID=CX300480; Name=CX300480; organism=Citrus clementina; type=EST; length=535bp
GGGTGATTATGCTGTTGTCATTAGTCATAATCCTGATAACGACACTACTA
GGATTAAGCTCCCATCTGGTGCCAAGAAGATTGTGCCGAGTGGGTGCCGT
GCTATGATTGGTCAAGTTGCCGGTGGAGGCAGAACAGAGAAGCCATTGTT
GAAGGCAGGAAATGCTTATCACAAGTTCAGGGTGAAGAGGAACTGCTGGC
CCAAGGTCCGTGGTGTTGCCATGAACCCTGTTGAGCATCCCCATGGTGGT
GGTAACCACCAGCACATTGGGCATGCAAGTACGGTTCGCCGTGATGCACC
CCCTGGCCAAAAGGTTGGTCTTATTGCTGCTAGGAGGACTGGTCGTCTTA
GAGGACAAGCAGCTGCCACTGCTGCAAAGGCTGACAAGGCTTAAAGTTTC
GCTTGAGCTCATTTTAATTTTGTTTTGTGCTGGTGAACATCTTCATATGG
TTGTTATCTGTTAGCATTAGATTTTGGTTTGCAATTTTGGAAGGTTACTA
ACTTCTTGTGATTAGTACATTGAAAGTGAGAGTAT
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