CX300481

Overview
NameCX300481
Unique NameCX300481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length501
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11580 contig Ccv1_Contig11580:795..1295. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300481 vs. ExPASy Swiss-Prot
Match: DJB11_CANFA (DnaJ homolog subfamily B member 11 OS=Canis familiaris GN=DNAJB11 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.486e-11
Identity = 35/98 (35.71%), Postives = 56/98 (57.14%), Query Frame = 1
Query:    7 FVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCK 300
            F ++  +HP F+R+GDDL+   T+SL E+L GF   ITHLDG ++ I     ++ +P        EG+P +    ++G L I F VDFP+    ++ +
Sbjct:  241 FRIKVVKHPIFERRGDDLYTNVTISLVESLVGFDMDITHLDGHKVHISRD--KITRPGAKLWKKGEGLPNFDNNNIKGSLIITFDVDFPKEQLTEEAR 336          
BLAST of CX300481 vs. ExPASy Swiss-Prot
Match: DJB11_RAT (DnaJ homolog subfamily B member 11 OS=Rattus norvegicus GN=Dnajb11 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.240e-11
Identity = 36/98 (36.73%), Postives = 56/98 (57.14%), Query Frame = 1
Query:    7 FVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCK 300
            F ++  +H  F+R+GDDL+   T+SL EAL GF+  ITHLDG ++ I     ++ +P        EG+P +    ++G L I F VDFP+    ++ K
Sbjct:  241 FRIKVVKHRIFERRGDDLYTNVTVSLVEALVGFEMDITHLDGHKVHISRD--KITRPGAKLWKKGEGLPNFDNNNIKGSLIITFDVDFPKEQLTEEAK 336          
BLAST of CX300481 vs. ExPASy Swiss-Prot
Match: DJB11_MOUSE (DnaJ homolog subfamily B member 11 OS=Mus musculus GN=Dnajb11 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.240e-11
Identity = 36/98 (36.73%), Postives = 56/98 (57.14%), Query Frame = 1
Query:    7 FVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCK 300
            F ++  +H  F+R+GDDL+   T+SL EAL GF+  ITHLDG ++ I     ++ +P        EG+P +    ++G L I F VDFP+    ++ K
Sbjct:  241 FRIKVVKHRIFERRGDDLYTNVTVSLVEALVGFEMDITHLDGHKVHISRD--KITRPGAKLWKKGEGLPNFDNNNIKGSLIITFDVDFPKEQLTEEAK 336          
BLAST of CX300481 vs. ExPASy Swiss-Prot
Match: DNJ20_CAEBR (DnaJ homolog dnj-20 OS=Caenorhabditis briggsae GN=dnj-20 PE=4 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.445e-11
Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = 1
Query:   34 KFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCK 300
            +F+RKGDDL+   T+SL +AL GF+  I HLDG   ++K Q  +V  P       DEGMP  +    +G L + F V+FP++   D+ K
Sbjct:  276 RFERKGDDLYTNVTISLQDALNGFEMEILHLDGH--MVKVQRDKVTWPGARLRKKDEGMPSMENNNKKGMLIVTFDVEFPKTELTDEQK 362          
The following BLAST results are available for this feature:
BLAST of CX300481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
DJB11_CANFA2.486e-1135.71DnaJ homolog subfamily B member 11 OS=Canis famili... [more]
DJB11_RAT4.240e-1136.73DnaJ homolog subfamily B member 11 OS=Rattus norve... [more]
DJB11_MOUSE4.240e-1136.73DnaJ homolog subfamily B member 11 OS=Mus musculus... [more]
DNJ20_CAEBR9.445e-1140.45DnaJ homolog dnj-20 OS=Caenorhabditis briggsae GN=... [more]

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Properties
Property NameValue
Genbank descriptionC07010F12SK SaltLeaf1 Citrus clementina cDNA clone C07010F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300481 ID=CX300481; Name=CX300481; organism=Citrus clementina; type=EST; length=501bp
ATTGTATTTGTTCTACAACAGAAAGAGCACCCGAAATTTAAGCGAAAGGG
TGATGACCTATTTGTTGAGCACACCCTGTCACTGACAGAAGCTCTCTGTG
GCTTTCAATTTGTAATAACTCATTTGGATGGCCGGCAACTCCTCATCAAA
TCCCAGCCTGGGGAAGTAGTCAAGCCGGACCAATTCAAGGCCATAAATGA
TGAAGGAATGCCTATGTATCAGAGGCCATTTATGAGGGGCAAACTGTACA
TTCATTTCACTGTTGACTTCCCTGAGTCACTGAGCCCAGACCAGTGCAAG
ATGCTGGAGACCGTACTACCTCCAAGGACCTCAGTCCAGCTCACCGATAT
GGAACTGGATGAGTGTGAAGAAACAACCCTGCATGATGTGAACATTGAGG
AGGAAATGCGAAGGAAGCAACAAGCAGCTCAGGAGGCATACGATGAAGAT
GACGATATGCAAGGTGGTGCCCAGAGAGTGCAGTGTGCTCAGCAGTGATG
A
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