CX300484

Overview
NameCX300484
Unique NameCX300484
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length560
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14229 contig Ccv1_Contig14229:45..604. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300484 vs. ExPASy Swiss-Prot
Match: ASK7_ARATH (SKP1-like protein 7 OS=Arabidopsis thaliana GN=ASK7 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.853e-27
Identity = 66/122 (54.10%), Postives = 84/122 (68.85%), Query Frame = 2
Query:   14 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKK-HVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMI 376
            S KKI LKSSDG+ FE+EE  A + QTI HM+E +C D VIP+ NVTS IL  VIEYC K HV+A       +  +++DLK WD +F++ DQ T+F L+ AA  L+IK LL L  QTVADM+
Sbjct:    2 STKKIMLKSSDGKMFEIEEETARQCQTIAHMIEAECTDNVIPVSNVTSEILEMVIEYCNKHHVDAA------NPCSDEDLKKWDKEFMEKDQYTIFHLMNAAYDLHIKSLLALAYQTVADMV 117          
BLAST of CX300484 vs. ExPASy Swiss-Prot
Match: ASK6_ARATH (SKP1-like protein 6 OS=Arabidopsis thaliana GN=ASK6 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.984e-21
Identity = 54/87 (62.07%), Postives = 65/87 (74.71%), Query Frame = 2
Query:   95 IKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDADFV-KVDQNTLFDLILAANYLNIKGLLDLT 352
            IK M EDDCAD  IPLPNVTS IL  VIEYCKKHV          +S E+DLK WDA+F+ K++Q+ LFD+++AANYLNI+ LLDLT
Sbjct:    3 IKGMAEDDCADNGIPLPNVTSKILLLVIEYCKKHVV---------ESKEEDLKKWDAEFMKKMEQSILFDVMMAANYLNIQSLLDLT 80          
BLAST of CX300484 vs. ExPASy Swiss-Prot
Match: ASK21_ARATH (SKP1-like protein 21 OS=Arabidopsis thaliana GN=ASK21 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.928e-14
Identity = 48/147 (32.65%), Postives = 84/147 (57.14%), Query Frame = 2
Query:   26 ITLKSSDGETFEVEETVALESQTI-KHMVEDDCADT---VIPLPN-VTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEE 451
            I L+++DG   +VE+ VA+    I + +++     +    I LP  V   +LS + +YC+ H   G  +K        + K +D  F+++D   L +L  AA+ L +K L+DLT + +A +I+GKTPEEIR+ F++ +D + +E+ E
Sbjct:   18 IWLETADGSIQQVEQEVAMFCPMICQEVIQKGVGSSKNYAISLPQRVNPAMLSLIFDYCRFHQVPGRSNK--------ERKVYDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLE 156          
BLAST of CX300484 vs. ExPASy Swiss-Prot
Match: ASK20_ARATH (SKP1-like protein 20 OS=Arabidopsis thaliana GN=ASK20 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.928e-14
Identity = 51/155 (32.90%), Postives = 88/155 (56.77%), Query Frame = 2
Query:    2 ETMSSEKKITLKSSDGETFEVEETVALESQTI-KHMVEDDCADT---VIPLPN-VTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEE 451
            ETM S   I L+++DG   +VE+ VA+    I + +++     +    I LP  V   + S +++YC+ H   G  +K        + KT+D  F+++D   L +L  AA+ L +K L+DLT + +A +I+GK PEEIR+ F++ +D + +E+ E
Sbjct:   12 ETMKSY--IWLQTADGSIQQVEQEVAMFCPMICQEVIQKGVGSSKNHAISLPQRVNPAMFSLILDYCRFHQLPGRSNK--------ERKTYDERFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKNPEEIREIFHLPDDLTEEEKLE 156          
The following BLAST results are available for this feature:
BLAST of CX300484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
ASK7_ARATH1.853e-2754.10SKP1-like protein 7 OS=Arabidopsis thaliana GN=ASK... [more]
ASK6_ARATH1.984e-2162.07SKP1-like protein 6 OS=Arabidopsis thaliana GN=ASK... [more]
ASK21_ARATH8.928e-1432.65SKP1-like protein 21 OS=Arabidopsis thaliana GN=AS... [more]
ASK20_ARATH8.928e-1432.90SKP1-like protein 20 OS=Arabidopsis thaliana GN=AS... [more]

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Properties
Property NameValue
Genbank descriptionC07010G03SK SaltLeaf1 Citrus clementina cDNA clone C07010G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300484 ID=CX300484; Name=CX300484; organism=Citrus clementina; type=EST; length=560bp
AGAAACGATGTCGTCTGAGAAGAAGATCACTCTGAAGAGTTCGGACGGTG
AGACGTTCGAGGTGGAGGAGACGGTGGCCCTCGAGTCGCAGACAATCAAG
CACATGGTGGAGGACGACTGCGCCGACACCGTAATCCCGCTGCCGAATGT
GACGAGCACGATTCTCTCGAAGGTTATCGAGTACTGCAAGAAGCACGTTG
AGGCTGGGTCAGGGGACAAGAAGGACGACAAGTCGACCGAGGATGATCTC
AAGACCTGGGATGCAGACTTCGTCAAGGTTGATCAGAATACCCTCTTTGA
CCTAATCTTGGCCGCCAATTACCTGAACATTAAGGGTTTGCTGGACTTGA
CCTGCCAAACTGTTGCAGACATGATCAAGGGGAAGACTCCAGAGGAGATC
CGCAAGACCTTCAACATCAAGAATGACTTCTCTCCCGATGAAGAAGAGGA
GGTTCGGAGAGAGAACCAATGGGCATTCGAGTGAAGGACTGAAGTGATGA
AGGCTCGGTAATTAATATTTGTGATAGGAATGTCGTTATAATGATAGTGG
TCTTTTAGTA
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