CX300486

Overview
NameCX300486
Unique NameCX300486
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:982..1523. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P_BACME (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus megaterium GN=gap PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 4.502e-20
Identity = 52/108 (48.15%), Postives = 64/108 (59.26%), Query Frame = 1
Query:    1 KGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 324
            KGKLNG A+RVPTPN           K+   E+VN A +E+A+ +LKGIL   +EPLVS D+                M  +MVKVI+WYDNE GYS RVVDLA  +A
Sbjct:  224 KGKLNGGAMRVPTPNVSLVDLVAELDKEVTVEDVNNALKEAAEGDLKGILGYSEEPLVSGDYNGNINSSTIDALSTMVMEGNMVKVISWYDNESGYSNRVVDLAQYIA 331          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P2_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Bacillus subtilis GN=gapB PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.003e-19
Identity = 52/112 (46.43%), Postives = 60/112 (53.57%), Query Frame = 1
Query:    1 KGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 336
            KGKL+G+ALRVP PN               AEEVN AF+ +A   + G+L   DEPLVS D+                M D  VKV+AWYDNEWGYS RVVDL   VA   K
Sbjct:  224 KGKLHGLALRVPVPNVSLVDLVVDLKTDVTAEEVNEAFKRAAKTSMYGVLDYSDEPLVSTDYNTNPHSAVIDGLTTMVMEDRKVKVLAWYDNEWGYSCRVVDLIRHVAARMK 335          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P2_STAAW (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MW2) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.214e-18
Identity = 50/105 (47.62%), Postives = 61/105 (58.10%), Query Frame = 1
Query:    1 KGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLAD 315
            +GKL+G+ALRVPT N           K+  AEEVN AF  +    L+GI+ V  +PLVSVDF                M  + VKVIAWYDNEWGYS RVVD+A+
Sbjct:  225 EGKLHGMALRVPTKNVSLVDLVVDLEKEVTAEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAE 326          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P2_STAAS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MSSA476) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.214e-18
Identity = 50/105 (47.62%), Postives = 61/105 (58.10%), Query Frame = 1
Query:    1 KGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLAD 315
            +GKL+G+ALRVPT N           K+  AEEVN AF  +    L+GI+ V  +PLVSVDF                M  + VKVIAWYDNEWGYS RVVD+A+
Sbjct:  225 EGKLHGMALRVPTKNVSLVDLVVDLEKEVTAEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAE 326          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P2_STAAR (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MRSA252) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.214e-18
Identity = 50/105 (47.62%), Postives = 61/105 (58.10%), Query Frame = 1
Query:    1 KGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLAD 315
            +GKL+G+ALRVPT N           K+  AEEVN AF  +    L+GI+ V  +PLVSVDF                M  + VKVIAWYDNEWGYS RVVD+A+
Sbjct:  225 EGKLHGMALRVPTKNVSLVDLVVDLEKEVTAEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPHSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAE 326          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P2_STAAN (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain N315) GN=gapA2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.214e-18
Identity = 50/105 (47.62%), Postives = 61/105 (58.10%), Query Frame = 1
Query:    1 KGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLAD 315
            +GKL+G+ALRVPT N           K+  AEEVN AF  +    L+GI+ V  +PLVSVDF                M  + VKVIAWYDNEWGYS RVVD+A+
Sbjct:  225 EGKLHGMALRVPTKNVSLVDLVVDLEKEVTAEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAE 326          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P2_STAAM (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gapA2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.214e-18
Identity = 50/105 (47.62%), Postives = 61/105 (58.10%), Query Frame = 1
Query:    1 KGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLAD 315
            +GKL+G+ALRVPT N           K+  AEEVN AF  +    L+GI+ V  +PLVSVDF                M  + VKVIAWYDNEWGYS RVVD+A+
Sbjct:  225 EGKLHGMALRVPTKNVSLVDLVVDLEKEVTAEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAE 326          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P2_STAAC (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain COL) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.214e-18
Identity = 50/105 (47.62%), Postives = 61/105 (58.10%), Query Frame = 1
Query:    1 KGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLAD 315
            +GKL+G+ALRVPT N           K+  AEEVN AF  +    L+GI+ V  +PLVSVDF                M  + VKVIAWYDNEWGYS RVVD+A+
Sbjct:  225 EGKLHGMALRVPTKNVSLVDLVVDLEKEVTAEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAE 326          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P_THEMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermotoga maritima GN=gap PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 45/107 (42.06%), Postives = 62/107 (57.94%), Query Frame = 1
Query:    1 KGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIV 321
            KGKL+G+A+RVPTP+           K+T  EEVNA  +E+ +  LKGI+   DEP+VS D                 +G  +VKV +WYDNE+GYS RVVD  +++
Sbjct:  224 KGKLDGMAIRVPTPDGSITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIVSSDIIGTTFSGIFDATITNVIGGKLVKVASWYDNEYGYSNRVVDTLELL 330          
BLAST of CX300486 vs. ExPASy Swiss-Prot
Match: G3P1_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Synechocystis sp. (strain PCC 6803) GN=gap1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 45/103 (43.69%), Postives = 58/103 (56.31%), Query Frame = 1
Query:    1 KGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 309
            KGKL G+A RVPTPN           K T  EE+ AA + +A+ ELKGIL    + +VS+DFR               +  +  KV++WYDNEWGYS RV+DL
Sbjct:  226 KGKLTGMAFRVPTPNVSVVDLTFKTEKATSYEEICAAMKTAAEGELKGILGYTADDVVSMDFRTDPRSSIFDAGAGIGLNSNFFKVVSWYDNEWGYSCRVIDL 328          
The following BLAST results are available for this feature:
BLAST of CX300486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
G3P_BACME4.502e-2048.15Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P2_BACSU1.003e-1946.43Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Baci... [more]
G3P2_STAAW4.214e-1847.62Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAS4.214e-1847.62Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAR4.214e-1847.62Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAN4.214e-1847.62Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAM4.214e-1847.62Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAC4.214e-1847.62Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P_THEMA9.387e-1842.06Glyceraldehyde-3-phosphate dehydrogenase OS=Thermo... [more]
G3P1_SYNY31.226e-1743.69Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Syne... [more]

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Properties
Property NameValue
Genbank descriptionC07010G05SK SaltLeaf1 Citrus clementina cDNA clone C07010G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300486 ID=CX300486; Name=CX300486; organism=Citrus clementina; type=EST; length=542bp
AAAGGCAAACTAAACGGCATTGCCCTTCGTGTGCCAACACCAAACGTCTC
GGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAAACCTTCGCAGAAGAGG
TGAACGCCGCTTTCAGAGAAAGCGCTGACAATGAACTGAAAGGGATCCTC
TCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACTTCAGGTGCTCTGATGT
ATCCTCAACCGTTGATTCATCTCTCACACTTGTCATGGGAGACGACATGG
TTAAGGTGATTGCATGGTATGACAATGAATGGGGTTACTCTCAAAGGGTT
GTGGATTTGGCCGACATTGTTGCCAACAACTGGAAGTGAAGTAAATACTA
AAATCGGAACTCGGCTGTAATCGGCACAACGATGTTCTTGTTTTTCATTT
TTGGTTCCCCCATTTATTGTTCTGCGTCTTAGAATTTGTAGAATGTATAA
CACTATCTTATTATGGAACCTTTTTCCTTTGCCTGTCATTAATCATTATG
CAATAAAATTCTTACATTAAAGTTGAAAAAAAAAAAAAAAAA
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